C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00003N_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000067607-ENSDARG00000056394 CGP 7955 3:62721991-62787959
GeneTranscriptPositionBiotype
ENSDARG00000056394 (TOM1L2)
target of myb1-like 2 (chicken) 		ENSDART00000097345 (TOM1L2-201) 62759005-62787959 protein_coding
ENSDARG00000067607 (srebf1)
sterol regulatory element binding transcription factor 1 		ENSDART00000092665 (srebf1-201) 62721991-62748815 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_00003N_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000072310-ENSG00000175662 CGP 9606 17:17810399-17972422
GeneTranscriptPositionBiotype
ENSG00000072310 (SREBF1)
sterol regulatory element binding transcription factor 1 		ENST00000261646 (SREBF1-002) 17812073-17837002 protein_coding
ENST00000355815 (SREBF1-003) 17812073-17836987 protein_coding
ENST00000395751 (SREBF1-018) 17812073-17820864 nonsense_mediated_decay
ENST00000395756 (SREBF1-005) 17812073-17818327 nonsense_mediated_decay
ENST00000395757 (SREBF1-004) 17812073-17819951 protein_coding
ENST00000423161 (SREBF1-021) 17819027-17823618 protein_coding
ENST00000447641 (SREBF1-012) 17814344-17816395 retained_intron
ENST00000469356 (SREBF1-010) 17816525-17818742 retained_intron
ENST00000470247 (SREBF1-007) 17818223-17819234 retained_intron
ENST00000471445 (SREBF1-011) 17816457-17817750 retained_intron
ENST00000476994 (SREBF1-006) 17820008-17823594 retained_intron
ENST00000478616 (SREBF1-015) 17812910-17814355 protein_coding
ENST00000485080 (SREBF1-016) 17810399-17813769 nonsense_mediated_decay
ENST00000486311 (SREBF1-014) 17812712-17814376 protein_coding
ENST00000487401 (SREBF1-009) 17817526-17818345 retained_intron
ENST00000490796 (SREBF1-013) 17814616-17816384 retained_intron
ENST00000577897 (SREBF1-017) 17819121-17820510 protein_coding
ENST00000578469 (SREBF1-026) 17811356-17813442 nonsense_mediated_decay
ENST00000580540 (SREBF1-019) 17817123-17817900 retained_intron
ENST00000581707 (SREBF1-020) 17814403-17815373 retained_intron
ENST00000583080 (SREBF1-025) 17817424-17818149 retained_intron
ENST00000583732 (SREBF1-024) 17819072-17823604 processed_transcript
ENST00000584760 (SREBF1-023) 17815597-17816338 retained_intron
ENSG00000108557 (RAI1)
retinoic acid induced 1 		ENST00000353383 (RAI1-001) 17681473-17811453 protein_coding
ENST00000395774 (RAI1-002) 17782132-17795776 protein_coding
ENST00000471135 (RAI1-006) 17682495-17793143 protein_coding
ENST00000489697 (RAI1-004) 17681729-17685050 processed_transcript
ENST00000582514 (RAI1-009) 17809282-17810689 processed_transcript
ENST00000583166 (RAI1-008) 17798384-17804114 protein_coding
ENSG00000197815 (RP1-253P7.4)
 ENST00000354746 (RP1-253P7.4-001) 17858227-17860041 antisense
ENSG00000207839 (MIR33B)
microRNA 33b 		ENST00000385104 (MIR33B-201) 17813836-17813931 miRNA
ENSG00000274111 (MIR6777)
microRNA 6777 		ENST00000613934 (MIR6777-201) 17813480-17813545 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_00003N_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020538-ENSMUSG00000000538 CGP 10090 11:60199089-60352905
GeneTranscriptPositionBiotype
ENSMUSG00000020538 (Srebf1)
sterol regulatory element binding transcription factor 1 		ENSMUST00000020846 (Srebf1-005) 60199089-60220604 protein_coding
ENSMUST00000129869 (Srebf1-011) 60201364-60202215 processed_transcript
ENSMUST00000134660 (Srebf1-006) 60199089-60207188 protein_coding
ENSMUST00000136215 (Srebf1-008) 60206950-60222581 processed_transcript
ENSMUST00000136426 (Srebf1-003) 60202659-60203488 processed_transcript
ENSMUST00000141161 (Srebf1-012) 60200130-60201040 processed_transcript
ENSMUST00000144942 (Srebf1-007) 60200463-60210465 protein_coding
ENSMUST00000147967 (Srebf1-009) 60205959-60210392 processed_transcript
ENSMUST00000149238 (Srebf1-001) 60203101-60204290 processed_transcript
ENSMUST00000154620 (Srebf1-010) 60204189-60206112 processed_transcript
ENSMUST00000154925 (Srebf1-002) 60201801-60203857 processed_transcript
ENSMUST00000156304 (Srebf1-004) 60201366-60202624 processed_transcript
ENSMUSG00000062115 (Rai1)
retinoic acid induced 1 		ENSMUST00000064190 (Rai1-201) 60105013-60199195 protein_coding
ENSMUST00000090806 (Rai1-001) 60140084-60192025 protein_coding
ENSMUST00000102688 (Rai1-005) 60175879-60199197 protein_coding
ENSMUST00000132012 (Rai1-003) 60105177-60185431 protein_coding
ENSMUST00000149770 (Rai1-002) 60105013-60199197 processed_transcript
ENSMUST00000156902 (Rai1-004) 60140259-60141247 processed_transcript
ENSMUST00000171108 (Rai1-202) 60140082-60199195 protein_coding
ENSMUSG00000082148 (Gm12266)
predicted gene 12266 		ENSMUST00000120311 (Gm12266-001) 60343245-60344206 processed_pseudogene
ENSMUSG00000098349 (Gm27711)
predicted gene, 27711 		ENSMUST00000183802 (Gm27711-201) 60302707-60302824 miRNA
ENSMUSG00000098547 (Mir6921)
microRNA 6921 		ENSMUST00000183719 (Mir6921-201) 60200538-60200617 miRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00003N_0001ENSDARG00000056394ENSDART00000097345ENSDARG00000067607ENSDART00000092665CIL_00003N_0002ENSG00000072310ENST00000261646ENST00000355815ENST00000395751ENST00000395756ENST00000395757ENST00000423161ENST00000447641ENST00000469356ENST00000470247ENST00000471445ENST00000476994ENST00000478616ENST00000485080ENST00000486311ENST00000487401ENST00000490796ENST00000577897ENST00000578469ENST00000580540ENST00000581707ENST00000583080ENST00000583732ENST00000584760ENSG00000108557ENST00000353383ENST00000395774ENST00000471135ENST00000489697ENST00000582514ENST00000583166ENSG00000197815ENST00000354746ENSG00000207839ENST00000385104ENSG00000274111ENST00000613934CIL_00003N_0003ENSMUSG00000020538ENSMUST00000020846ENSMUST00000129869ENSMUST00000134660ENSMUST00000136215ENSMUST00000136426ENSMUST00000141161ENSMUST00000144942ENSMUST00000147967ENSMUST00000149238ENSMUST00000154620ENSMUST00000154925ENSMUST00000156304ENSMUSG00000062115ENSMUST00000064190ENSMUST00000090806ENSMUST00000102688ENSMUST00000132012ENSMUST00000149770ENSMUST00000156902ENSMUST00000171108ENSMUSG00000082148ENSMUST00000120311ENSMUSG00000098349ENSMUST00000183802ENSMUSG00000098547ENSMUST00000183719
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00003N_0001ENSDARG00000056394ENSDART00000097345ENSDARG00000067607ENSDART00000092665CIL_00003N_0002ENSG00000072310ENST00000261646ENST00000355815ENST00000395751ENST00000395756ENST00000395757ENST00000470247ENST00000476994ENST00000487401ENST00000583732ENSG00000108557ENST00000353383ENSG00000197815ENST00000354746ENSG00000207839ENST00000385104ENSG00000274111ENST00000613934CIL_00003N_0003ENSMUSG00000020538ENSMUST00000020846ENSMUST00000134660ENSMUST00000144942ENSMUST00000149238ENSMUST00000154620ENSMUSG00000062115ENSMUST00000064190ENSMUST00000090806ENSMUST00000102688ENSMUST00000149770ENSMUST00000171108ENSMUSG00000082148ENSMUST00000120311ENSMUSG00000098349ENSMUST00000183802ENSMUSG00000098547ENSMUST00000183719
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000056394 ENSDART00000097345 N/A N/A N/A 6.507±0.00 N/A N/A 1.036±0.56 N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000067607 ENSDART00000092665 N/A N/A N/A 0.074±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000072310 ENST00000261646 5.926±0.00 11.856±0.00 1.828±0.00 10.679±0.00 5.066±3.68 2.918±0.07 1.812±1.13 6.851±0.00 11.148±0.00 14.035±0.00 3.249±0.00 16.514±11.86 8.919±2.43 7.313±0.87
ENST00000355815 N/A N/A N/A 11.175±7.67 30.994±0.00 N/A N/A 17.261±0.00 13.434±11.05 N/A 4.899±2.50 22.628±16.84 3.779±0.24 12.074±2.06
ENST00000395751 N/A N/A N/A N/A N/A 1.497±0.10 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000395756 N/A 10.074±0.00 N/A N/A N/A 3.339±0.00 N/A 5.032±0.00 19.359±0.00 N/A 3.909±0.00 9.864±0.00 5.233±0.64 16.020±0.00
ENST00000395757 N/A 7.069±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000423161 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447641 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469356 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470247 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 45.216±0.00
ENST00000471445 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476994 N/A N/A N/A N/A N/A N/A 3.522±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000478616 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486311 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487401 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.382±0.00 46.207±0.00
ENST00000490796 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000577897 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578469 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580540 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581707 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583732 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.195±0.00 N/A N/A N/A
ENST00000584760 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000108557 ENST00000353383 3.144±0.00 N/A N/A 3.590±2.70 4.700±0.00 2.114±0.00 1.301±1.05 3.311±0.00 1.353±0.00 4.156±2.73 1.741±0.00 0.727±0.00 2.352±0.64 4.721±0.12
ENST00000395774 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471135 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489697 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582514 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583166 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000197815 ENST00000354746 0.497±0.00 1.139±0.00 N/A 1.689±0.17 0.918±0.17 N/A 1.594±0.01 0.478±0.00 0.148±0.00 0.352±0.00 0.254±0.09 1.044±0.60 0.118±0.00 2.684±0.00
ENSG00000207839 ENST00000385104 N/A 0.735±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000274111 ENST00000613934 1.251±0.00 0.668±0.00 N/A 0.712±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.608±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020538 ENSMUST00000020846 40.124±2.84 73.562±18.21 32.187±12.87 12.721±1.12 95.948±29.54 37.353±10.08 4.908±0.60 15.849±3.58 28.951±22.09 35.719±6.20 6.177±2.07 30.343±11.56 14.148±3.31 2.448±1.02
ENSMUST00000129869 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134660 41.070±7.65 55.969±12.74 21.147±8.00 N/A 86.383±34.49 13.826±1.99 N/A 10.572±4.10 25.642±15.89 16.621±3.11 3.615±0.00 19.737±4.22 N/A N/A
ENSMUST00000136215 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136426 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141161 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144942 39.633±0.73 32.456±0.00 N/A N/A 75.433±0.00 N/A 4.276±0.00 6.179±0.18 18.557±7.94 N/A 6.545±1.26 9.707±0.00 N/A 1.657±0.00
ENSMUST00000147967 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149238 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 40.675±7.02 N/A
ENSMUST00000154620 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 39.440±0.00 N/A
ENSMUST00000154925 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156304 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000062115 ENSMUST00000064190 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.755±0.68 6.018±0.00 N/A 0.585±0.00
ENSMUST00000090806 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.698±0.00 2.699±0.00 0.480±0.18
ENSMUST00000102688 10.057±0.00 13.269±1.01 N/A 15.988±8.01 N/A 6.479±0.35 2.941±1.01 3.151±0.11 3.178±0.00 8.895±1.40 2.193±0.28 11.724±2.91 7.549±0.00 0.661±0.00
ENSMUST00000132012 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149770 N/A N/A N/A 22.776±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156902 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171108 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.498±0.00 8.282±2.60 0.734±0.00
ENSMUSG00000082148 ENSMUST00000120311 0.314±0.16 0.301±0.21 N/A 0.071±0.00 0.252±0.09 0.292±0.12 0.207±0.07 0.682±0.16 0.127±0.07 0.365±0.26 0.054±0.01 0.279±0.21 0.089±0.06 0.131±0.10
ENSMUSG00000098349 ENSMUST00000183802 N/A N/A N/A 8.806±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000098547 ENSMUST00000183719 N/A N/A N/A N/A 11618.700±0.00 N/A N/A 16785.500±0.00 N/A N/A N/A 125.920±0.00 N/A N/A

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