C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP synthase mitochondrial F1 complex assembly factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000145532 Atpaf2-005 ENSMUSG00000042709 10090 - 11:60401478-60417018 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000145532
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000145532 7.528±0.00 10.675±0.00 10.368±1.77 22.739±19.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000DY CIL_0000DY_0002 CGP 11:60353329-60418457
CIL_0000DZ CIL_0000DZ_0002 CGP 11:60400626-60450927

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005739 IDA mitochondrion
GO:0008150 ND biological_process
GO:0043461 IEA proton-transporting ATP synthase complex assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000444058 ATPAF2-015 protein_coding Homo_sapiens 0 569
ENST00000462733 ATPAF2-003 nonsense_mediated_decay Homo_sapiens 2e-26 124
ENST00000467560 ATPAF2-011 retained_intron Homo_sapiens 0 246
ENST00000469327 ATPAF2-008 processed_transcript Homo_sapiens 0 213
ENST00000474627 ATPAF2-001 protein_coding Homo_sapiens 0 811
ENST00000488753 ATPAF2-007 retained_intron Homo_sapiens 0 377
ENST00000496852 ATPAF2-004 retained_intron Homo_sapiens 0 470
ENST00000497871 ATPAF2-006 retained_intron Homo_sapiens 0 340
ENST00000577586 ATPAF2-012 processed_transcript Homo_sapiens 0 340
ENST00000581698 ATPAF2-014 protein_coding Homo_sapiens 3e-20 102
ENST00000584205 ATPAF2-020 nonsense_mediated_decay Homo_sapiens 5e-27 126
ENST00000585101 ATPAF2-013 protein_coding Homo_sapiens 2e-27 126

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