C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: potassium voltage-gated channel, subfamily H (eag-related), member 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000145539 Kcnh6-004 ENSMUSG00000001901 10090 + 11:106008203-106034064 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartKidneyLiverLungOvaryTestisENSMUST00000145539
Transcript ID Adrenal Brain Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000145539 0.131±0.05 0.111±0.00 0.496±0.17 0.087±0.00 0.023±0.01 0.006±0.00 0.038±0.01 0.181±0.09 0.084±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B9 CIL_0009B9_0002 VISTA 11:105834084-106435839
CIL_0006ZT CIL_0006ZT_0002 CGP 11:106008124-106059324

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004871 IEA signal transducer activity
GO:0005249 IBA voltage-gated potassium channel activity
GO:0005887 IBA integral component of plasma membrane
GO:0007165 IEA signal transduction
GO:0042391 IBA regulation of membrane potential
GO:0071805 IBA potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000090809 kcnh6-201 protein_coding Danio_rerio 0 824
ENSDART00000134201 kcnh6-001 protein_coding Danio_rerio 0 824
ENSDART00000084238 KCNH7 (4 of 6)-201 protein_coding Danio_rerio 0 680
ENSDART00000126934 CABZ01064069.1-201 protein_coding Danio_rerio 0.00000000000007 84
ENSDART00000090874 KCNH7 (5 of 6)-201 protein_coding Danio_rerio 0.00000002 66
ENSDART00000151288 KCNH7 (5 of 6)-001 protein_coding Danio_rerio 0.00000002 66
ENST00000262186 KCNH2-001 protein_coding Homo_sapiens 0 1365
ENST00000314672 KCNH6-001 protein_coding Homo_sapiens 0 2771
ENST00000330883 KCNH2-004 protein_coding Homo_sapiens 0 1328
ENST00000430723 KCNH2-201 protein_coding Homo_sapiens 0 1229
ENST00000456941 KCNH6-201 protein_coding Homo_sapiens 0 1561
ENST00000461280 KCNH2-008 retained_intron Homo_sapiens 0 1192
ENST00000473610 KCNH2-005 retained_intron Homo_sapiens 0 497
ENST00000532957 KCNH2-002 retained_intron Homo_sapiens 0 1229
ENST00000580652 KCNH6-003 protein_coding Homo_sapiens 0 1886
ENST00000581784 KCNH6-002 protein_coding Homo_sapiens 0 1561
ENST00000583023 KCNH6-005 protein_coding Homo_sapiens 0 2771
ENST00000583465 KCNH6-004 nonsense_mediated_decay Homo_sapiens 0 2344

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