C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: collagen, type I, alpha 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000148864 Col1a2-004 ENSMUSG00000029661 10090 + 6:4520624-4529452 retained_intron

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006DY CIL_0006DY_0002 CGP 6:4076899-4541543
CIL_00082O CIL_00082O_0002 VISTA 6:4156170-4759324
CIL_0007XR CIL_0007XR_0002 VISTA 6:4183463-4785322
CIL_00095G CIL_00095G_0002 VISTA 6:4188993-4790635
CIL_0008ZR CIL_0008ZR_0002 VISTA 6:4253537-4855066
CIL_0004SO CIL_0004SO_0003 CGP 6:4504814-4643381

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000297268 COL1A2-001 protein_coding Homo_sapiens 0 889
ENST00000461525 COL1A2-005 retained_intron Homo_sapiens 0.000000000000005 86
ENST00000473573 COL1A2-007 retained_intron Homo_sapiens 0 239
ENST00000488298 COL1A2-012 retained_intron Homo_sapiens 0 359
ENST00000497316 COL1A2-004 retained_intron Homo_sapiens 0 196
ENST00000620463 COL1A2-201 protein_coding Homo_sapiens 0 889

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