C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type I, alpha 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000297268 COL1A2-001 ENSG00000164692 9606 + 7:94394561-94431232 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000297268
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000297268 12.899±0.00 18.811±0.00 2.095±0.00 0.492±0.06 58.405±5.26 13.454±1.61 5.100±0.44 12.889±0.00 1.887±0.00 13.803±3.56 3.415±0.00 132.611±101.36 114.140±32.23 36.541±14.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006DY CIL_0006DY_0001 CGP 7:93962762-94431232
CIL_00082O CIL_00082O_0001 VISTA 7:94046650-94649568
CIL_0007XR CIL_0007XR_0001 VISTA 7:94067785-94669696
CIL_00095G CIL_00095G_0001 VISTA 7:94074791-94676705
CIL_0008ZR CIL_0008ZR_0001 VISTA 7:94144032-94745602
CIL_0004SO CIL_0004SO_0002 CGP 7:94394561-94557019

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0001568 IMP blood vessel development
GO:0005201 NAS:IEA extracellular matrix structural constituent
GO:0005515 IPI protein binding
GO:0005576 TAS extracellular region
GO:0005581 IEA collagen trimer
GO:0005584 IMP collagen type I trimer
GO:0005615 IDA extracellular space
GO:0005788 TAS endoplasmic reticulum lumen
GO:0007179 IDA transforming growth factor beta receptor signaling pathway
GO:0007266 IDA Rho protein signal transduction
GO:0007596 TAS blood coagulation
GO:0008217 IMP regulation of blood pressure
GO:0022617 TAS extracellular matrix disassembly
GO:0030168 TAS platelet activation
GO:0030198 TAS extracellular matrix organization
GO:0030199 IMP collagen fibril organization
GO:0030574 TAS collagen catabolic process
GO:0030674 IMP protein binding, bridging
GO:0031012 IDA extracellular matrix
GO:0042476 NAS odontogenesis
GO:0042802 IDA identical protein binding
GO:0043589 IMP skin morphogenesis
GO:0046332 IEA SMAD binding
GO:0046872 IEA metal ion binding
GO:0048407 IDA platelet-derived growth factor binding
GO:0050900 TAS leukocyte migration
GO:0070062 IDA extracellular vesicular exosome
GO:0070208 IEA protein heterotrimerization
GO:0071230 IEA cellular response to amino acid stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031668 Col1a2-001 protein_coding Mus_musculus 0 5664
ENSDART00000042990 col1a2-201 protein_coding Danio_rerio 0 1101
ENSDART00000144544 col1a2-001 protein_coding Danio_rerio 0 1101
ENSMUST00000148864 Col1a2-004 retained_intron Mus_musculus 0 889
ENSMUST00000155687 Col1a2-006 retained_intron Mus_musculus 0 813
ENSMUST00000141483 Col1a2-005 protein_coding Mus_musculus 0 756
ENSMUST00000138511 Col1a2-002 retained_intron Mus_musculus 0 427
ENSMUST00000132029 Col1a2-003 retained_intron Mus_musculus 0 311
ENSDART00000047010 col1a1a-201 protein_coding Danio_rerio 2e-31 143
ENSDART00000015092 col1a1b-001 protein_coding Danio_rerio 2e-31 143
ENSDART00000009393 col1a1a-001 protein_coding Danio_rerio 3e-30 139
ENSDART00000140586 col1a1a-002 processed_transcript Danio_rerio 1e-29 137
ENSMUST00000026740 Col7a1-201 protein_coding Mus_musculus 0.000008 58
ENSMUST00000126780 Col7a1-002 retained_intron Mus_musculus 0.000008 58
ENSMUST00000112070 Col7a1-001 protein_coding Mus_musculus 0.000008 58

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