C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type I, alpha 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029661 Col1a2 10090 + 6:4504814-4541543 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031668 Col1a2-001 4505493-4541543 protein_coding
  ENSMUST00000124686 Col1a2-008 4535781-4536623 retained_intron
  ENSMUST00000132029 Col1a2-003 4505702-4515019 retained_intron
  ENSMUST00000138511 Col1a2-002 4505702-4514529 retained_intron
  ENSMUST00000139201 Col1a2-007 4534904-4535885 retained_intron
  ENSMUST00000141483 Col1a2-005 4504814-4516419 protein_coding
  ENSMUST00000148864 Col1a2-004 4520624-4529452 retained_intron
  ENSMUST00000155687 Col1a2-006 4530156-4535057 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031668ENSMUST00000138511ENSMUST00000141483
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031668 139.585±122.17 22.421±1.80 512.787±17.02 22.251±15.79 205.415±81.10 32.780±24.31 14.043±9.86 25.245±3.52 6.616±6.47 52.637±37.59 28.950±4.12 137.778±71.68 141.615±0.12 5.597±4.12
ENSMUST00000138511 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 341.659±0.00 N/A N/A
ENSMUST00000141483 N/A 27.895±4.23 N/A N/A N/A 48.306±0.00 25.359±0.00 19.781±2.64 2.709±0.70 N/A N/A 289.930±48.24 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006DY CIL_0006DY_0002 CGP 6:4076899-4541543
CIL_00082O CIL_00082O_0002 VISTA 6:4156170-4759324
CIL_0007XR CIL_0007XR_0002 VISTA 6:4183463-4785322
CIL_00095G CIL_00095G_0002 VISTA 6:4188993-4790635
CIL_0008ZR CIL_0008ZR_0002 VISTA 6:4253537-4855066
CIL_0004SO CIL_0004SO_0003 CGP 6:4504814-4643381

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001501 IEA skeletal system development
GO:0001568 IEA blood vessel development
GO:0005201 IEA extracellular matrix structural constituent
GO:0005515 IPI protein binding
GO:0005581 IDA collagen trimer
GO:0005584 IDA collagen type I trimer
GO:0005615 IEA extracellular space
GO:0007179 IEA transforming growth factor beta receptor signaling pathway
GO:0007266 IEA Rho protein signal transduction
GO:0008217 IEA regulation of blood pressure
GO:0030199 IEA collagen fibril organization
GO:0030674 IEA protein binding, bridging
GO:0031012 IDA extracellular matrix
GO:0042802 IEA identical protein binding
GO:0043589 IEA skin morphogenesis
GO:0046332 IPI SMAD binding
GO:0046872 IEA metal ion binding
GO:0048407 IEA platelet-derived growth factor binding
GO:0070062 IEA extracellular vesicular exosome
GO:0070208 IDA protein heterotrimerization
GO:0071230 IDA cellular response to amino acid stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020007 col1a2 collagen, type I, alpha 2 protein_coding Danio_rerio
ENSG00000164692 COL1A2 collagen, type I, alpha 2 protein_coding Homo_sapiens

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