C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type I, alpha 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000620463 COL1A2-201 ENSG00000164692 9606 + 7:94394914-94430703 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000620463
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000620463 80.291±0.00 96.884±0.00 3.734±0.00 1.538±0.87 152.479±64.49 46.730±17.62 21.229±14.13 24.541±19.38 37.950±26.02 61.967±40.02 9.935±6.24 258.471±194.71 232.823±65.08 90.358±60.99

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006DY CIL_0006DY_0001 CGP 7:93962762-94431232
CIL_00082O CIL_00082O_0001 VISTA 7:94046650-94649568
CIL_0007XR CIL_0007XR_0001 VISTA 7:94067785-94669696
CIL_00095G CIL_00095G_0001 VISTA 7:94074791-94676705
CIL_0008ZR CIL_0008ZR_0001 VISTA 7:94144032-94745602
CIL_0004SO CIL_0004SO_0002 CGP 7:94394561-94557019

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005201 IEA extracellular matrix structural constituent
GO:0005581 IEA collagen trimer

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031668 Col1a2-001 protein_coding Mus_musculus 0 4972
ENSDART00000042990 col1a2-201 protein_coding Danio_rerio 0 1101
ENSDART00000144544 col1a2-001 protein_coding Danio_rerio 0 1101
ENSMUST00000148864 Col1a2-004 retained_intron Mus_musculus 0 889
ENSMUST00000155687 Col1a2-006 retained_intron Mus_musculus 0 813
ENSMUST00000141483 Col1a2-005 protein_coding Mus_musculus 0 708
ENSMUST00000138511 Col1a2-002 retained_intron Mus_musculus 0 375
ENSMUST00000132029 Col1a2-003 retained_intron Mus_musculus 0 272
ENSDART00000047010 col1a1a-201 protein_coding Danio_rerio 2e-31 143
ENSDART00000015092 col1a1b-001 protein_coding Danio_rerio 2e-31 143
ENSDART00000009393 col1a1a-001 protein_coding Danio_rerio 2e-30 139
ENSDART00000140586 col1a1a-002 processed_transcript Danio_rerio 8e-30 137
ENSMUST00000026740 Col7a1-201 protein_coding Mus_musculus 0.000006 58
ENSMUST00000126780 Col7a1-002 retained_intron Mus_musculus 0.000006 58
ENSMUST00000112070 Col7a1-001 protein_coding Mus_musculus 0.000006 58

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