C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006DY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000105829-ENSG00000164692 CGP 9606 7:93962762-94431232
GeneTranscriptPositionBiotype
ENSG00000105829 (BET1)
Bet1 golgi vesicular membrane trafficking protein 		ENST00000222547 (BET1-001) 93993242-94004375 protein_coding
ENST00000357520 (BET1-005) 93962762-94004355 nonsense_mediated_decay
ENST00000424151 (BET1-007) 93965410-93968390 processed_transcript
ENST00000425626 (BET1-004) 93996031-94004382 protein_coding
ENST00000433727 (BET1-002) 93993260-94004361 protein_coding
ENST00000457139 (BET1-003) 93993273-93999719 protein_coding
ENST00000471446 (BET1-006) 93972383-93996321 processed_transcript
ENSG00000164692 (COL1A2)
collagen, type I, alpha 2 		ENST00000297268 (COL1A2-001) 94394561-94431232 protein_coding
ENST00000461525 (COL1A2-005) 94417772-94421400 retained_intron
ENST00000464916 (COL1A2-003) 94427312-94430367 retained_intron
ENST00000467931 (COL1A2-006) 94419453-94421046 retained_intron
ENST00000469732 (COL1A2-008) 94423988-94425787 retained_intron
ENST00000473573 (COL1A2-007) 94414220-94422040 retained_intron
ENST00000478215 (COL1A2-009) 94425270-94426729 retained_intron
ENST00000481570 (COL1A2-002) 94422471-94430688 retained_intron
ENST00000488121 (COL1A2-011) 94426510-94427492 retained_intron
ENST00000488298 (COL1A2-012) 94413709-94416810 retained_intron
ENST00000492110 (COL1A2-010) 94426783-94427507 retained_intron
ENST00000497316 (COL1A2-004) 94417464-94423118 retained_intron
ENST00000620463 (COL1A2-201) 94394914-94430703 protein_coding
ENSG00000236453 (AC003092.1)
 ENST00000415536 (AC003092.1-001) 94022833-94064723 lincRNA
ENST00000438538 (AC003092.1-002) 94061141-94066661 lincRNA
ENSG00000236861 (AC006378.2)
 ENST00000426193 (AC006378.2-002) 93969442-94000372 antisense
ENST00000426634 (AC006378.2-001) 93969448-94011113 antisense
ENSG00000236938 (AC003092.2)
 ENST00000411946 (AC003092.2-001) 94071759-94077157 lincRNA
CIL_0006DY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000032757-ENSMUSG00000029661 CGP 10090 6:4076899-4541543
GeneTranscriptPositionBiotype
ENSMUSG00000029661 (Col1a2)
collagen, type I, alpha 2 		ENSMUST00000031668 (Col1a2-001) 4505493-4541543 protein_coding
ENSMUST00000124686 (Col1a2-008) 4535781-4536623 retained_intron
ENSMUST00000132029 (Col1a2-003) 4505702-4515019 retained_intron
ENSMUST00000138511 (Col1a2-002) 4505702-4514529 retained_intron
ENSMUST00000139201 (Col1a2-007) 4534904-4535885 retained_intron
ENSMUST00000141483 (Col1a2-005) 4504814-4516419 protein_coding
ENSMUST00000148864 (Col1a2-004) 4520624-4529452 retained_intron
ENSMUST00000155687 (Col1a2-006) 4530156-4535057 retained_intron
ENSMUSG00000032757 (Bet1)
blocked early in transport 1 homolog (S. cerevisiae) 		ENSMUST00000049166 (Bet1-001) 4076899-4086972 protein_coding
ENSMUST00000145696 (Bet1-003) 4081495-4086930 processed_transcript
ENSMUST00000150319 (Bet1-002) 4080318-4086972 retained_intron
ENSMUSG00000098779 (Gm8602)
predicted gene 8602 		ENSMUST00000184045 (Gm8602-001) 4359027-4359507 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006DY_0001ENSG00000105829ENST00000222547ENST00000357520ENST00000424151ENST00000425626ENST00000433727ENST00000457139ENST00000471446ENSG00000164692ENST00000297268ENST00000461525ENST00000464916ENST00000467931ENST00000469732ENST00000473573ENST00000478215ENST00000481570ENST00000488121ENST00000488298ENST00000492110ENST00000497316ENST00000620463ENSG00000236453ENST00000415536ENST00000438538ENSG00000236861ENST00000426193ENST00000426634ENSG00000236938ENST00000411946CIL_0006DY_0002ENSMUSG00000029661ENSMUST00000031668ENSMUST00000124686ENSMUST00000132029ENSMUST00000138511ENSMUST00000139201ENSMUST00000141483ENSMUST00000148864ENSMUST00000155687ENSMUSG00000032757ENSMUST00000049166ENSMUST00000145696ENSMUST00000150319ENSMUSG00000098779ENSMUST00000184045
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006DY_0001ENSG00000105829ENST00000222547ENST00000357520ENST00000425626ENST00000433727ENST00000457139ENST00000471446ENSG00000164692ENST00000297268ENST00000473573ENST00000497316ENST00000620463ENSG00000236453ENST00000415536ENST00000438538ENSG00000236861ENST00000426193ENST00000426634ENSG00000236938ENST00000411946CIL_0006DY_0002ENSMUSG00000029661ENSMUST00000031668ENSMUST00000138511ENSMUST00000141483ENSMUSG00000032757ENSMUST00000049166ENSMUST00000145696ENSMUST00000150319ENSMUSG00000098779ENSMUST00000184045
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000105829 ENST00000222547 3.632±0.00 2.618±0.00 1.117±0.00 2.793±0.53 4.424±2.46 5.044±0.00 1.663±1.09 6.066±2.79 4.313±0.40 4.038±0.00 0.409±0.00 7.600±1.55 8.022±2.30 5.164±1.03
ENST00000357520 N/A 0.508±0.00 N/A 0.313±0.00 N/A 0.334±0.00 N/A N/A N/A 0.615±0.00 0.096±0.06 N/A 0.485±0.00 N/A
ENST00000424151 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000425626 N/A N/A 1.036±0.00 N/A 2.615±0.00 3.310±0.00 N/A N/A 2.721±0.00 N/A N/A N/A N/A N/A
ENST00000433727 1.296±0.00 1.672±0.00 N/A N/A 2.481±0.00 2.030±0.00 1.029±0.00 2.699±0.47 N/A 1.739±0.00 0.296±0.00 3.817±0.50 3.091±1.72 1.700±0.62
ENST00000457139 N/A N/A N/A 1.555±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471446 N/A N/A 2.838±0.00 N/A N/A N/A N/A N/A N/A N/A 2.564±0.00 N/A N/A N/A
ENSG00000164692 ENST00000297268 12.899±0.00 18.811±0.00 2.095±0.00 0.492±0.06 58.405±5.26 13.454±1.61 5.100±0.44 12.889±0.00 1.887±0.00 13.803±3.56 3.415±0.00 132.611±101.36 114.140±32.23 36.541±14.37
ENST00000461525 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464916 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467931 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469732 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473573 N/A N/A 9.120±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478215 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481570 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488121 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488298 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492110 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497316 N/A N/A N/A 1.496±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620463 80.291±0.00 96.884±0.00 3.734±0.00 1.538±0.87 152.479±64.49 46.730±17.62 21.229±14.13 24.541±19.38 37.950±26.02 61.967±40.02 9.935±6.24 258.471±194.71 232.823±65.08 90.358±60.99
ENSG00000236453 ENST00000415536 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.067±0.00 N/A 0.080±0.03 0.372±0.14 N/A
ENST00000438538 N/A N/A N/A N/A 0.015±0.00 N/A N/A N/A N/A N/A N/A N/A 0.197±0.00 N/A
ENSG00000236861 ENST00000426193 0.036±0.00 N/A N/A N/A 0.407±0.24 N/A 0.034±0.00 N/A 0.011±0.00 N/A 0.101±0.00 0.124±0.00 1.248±0.00 N/A
ENST00000426634 0.036±0.00 N/A N/A 0.082±0.00 N/A N/A 0.069±0.04 N/A 0.011±0.00 N/A 0.245±0.00 N/A 0.664±0.43 N/A
ENSG00000236938 ENST00000411946 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.126±0.00 0.134±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029661 ENSMUST00000031668 139.585±122.17 22.421±1.80 512.787±17.02 22.251±15.79 205.415±81.10 32.780±24.31 14.043±9.86 25.245±3.52 6.616±6.47 52.637±37.59 28.950±4.12 137.778±71.68 141.615±0.12 5.597±4.12
ENSMUST00000124686 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132029 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138511 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 341.659±0.00 N/A N/A
ENSMUST00000139201 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141483 N/A 27.895±4.23 N/A N/A N/A 48.306±0.00 25.359±0.00 19.781±2.64 2.709±0.70 N/A N/A 289.930±48.24 N/A N/A
ENSMUST00000148864 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155687 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000032757 ENSMUST00000049166 8.256±1.02 10.281±3.25 13.983±2.38 5.699±3.66 5.311±0.89 4.426±0.80 3.769±0.46 8.976±1.44 16.730±4.85 9.749±2.37 8.512±0.94 6.287±2.96 11.850±6.27 4.525±1.91
ENSMUST00000145696 6.516±0.09 14.229±7.16 N/A N/A 4.163±1.59 5.173±1.19 9.482±4.00 8.922±2.22 17.316±2.06 7.062±0.47 N/A 4.534±1.79 N/A 16.276±1.87
ENSMUST00000150319 1.889±0.52 1.925±0.17 1.232±0.32 0.747±0.51 1.794±0.30 1.587±0.61 0.619±0.04 1.104±0.36 2.065±0.71 2.587±0.67 N/A 1.848±0.86 1.040±0.64 0.978±0.18
ENSMUSG00000098779 ENSMUST00000184045 N/A 0.058±0.00 N/A N/A 0.131±0.00 N/A N/A N/A N/A N/A N/A 0.308±0.16 0.030±0.00 N/A

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