C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphatase and actin regulator 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000148891 Phactr1-003 ENSMUSG00000054728 10090 + 13:42709581-43138526 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000148891
Transcript ID Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000148891 0.783±0.36 0.911±0.00 7.596±3.90 0.152±0.00 0.484±0.28 0.469±0.00 0.073±0.05 10.573±4.70 0.275±0.08 1.357±0.66 3.714±2.17 1.110±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003IC CIL_0003IC_0002 CGP 13:42301270-43138526
CIL_0001BV CIL_0001BV_0003 CGP 13:42680623-43171501

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA:IDA actin binding
GO:0004864 IEA protein phosphatase inhibitor activity
GO:0005634 IDA nucleus
GO:0005829 IDA cytosol
GO:0030054 IEA cell junction
GO:0031032 IMP actomyosin structure organization
GO:0031532 IMP actin cytoskeleton reorganization
GO:0043086 IEA negative regulation of catalytic activity
GO:0043149 IMP stress fiber assembly
GO:0045202 IEA synapse

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000332995 PHACTR1-005 protein_coding Homo_sapiens 0 1491
ENST00000379329 PHACTR1-004 protein_coding Homo_sapiens 0 351
ENST00000379335 PHACTR1-003 protein_coding Homo_sapiens 0 595
ENST00000379348 PHACTR1-010 protein_coding Homo_sapiens 0 231
ENST00000379350 PHACTR1-001 protein_coding Homo_sapiens 0 994
ENST00000406205 PHACTR1-006 protein_coding Homo_sapiens 0 874
ENST00000415087 PHACTR1-201 protein_coding Homo_sapiens 0 1491
ENST00000434977 PHACTR1-002 protein_coding Homo_sapiens 0 721
ENST00000489548 PHACTR1-009 processed_transcript Homo_sapiens 0 405
ENST00000502313 HMGB1P21-001 processed_pseudogene Homo_sapiens 0.0003 53

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