C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 1 pseudogene 21
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000502313 HMGB1P21-001 ENSG00000248909 9606 - 5:78644265-78644845 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000502313
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000502313 0.023±0.00 0.221±0.04 0.826±0.71 0.779±0.70 0.021±0.00 0.534±0.42 0.148±0.13 1.186±0.00 0.021±0.00 0.356±0.46 0.569±0.00 0.057±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00077A CIL_00077A_0002 CGP 5:78485215-78986087

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000119715 Gm5937-001 processed_pseudogene Mus_musculus 0 547
ENSMUST00000082150 Hmgb1l-201 processed_pseudogene Mus_musculus 0 451
ENSMUST00000128646 Phactr1-001 protein_coding Mus_musculus 0.0004 53
ENSMUST00000066928 Phactr1-002 protein_coding Mus_musculus 0.0001 53
ENSMUST00000148891 Phactr1-003 protein_coding Mus_musculus 0.0003 53
ENSMUST00000131942 Phactr1-005 protein_coding Mus_musculus 0.0001 53
ENSMUST00000149235 Phactr1-008 protein_coding Mus_musculus 0.0001 53
ENSMUST00000110161 Phactr1-201 protein_coding Mus_musculus 0.0001 53

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