C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CAP-GLY domain containing linker protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000149410 Clip1-004 ENSMUSG00000049550 10090 - 5:123617706-123666690 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENSMUST00000149410
Transcript ID Testis
ENSMUST00000149410 18.040±11.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ZE CIL_0002ZE_0002 CGP 5:123528764-123684618
CIL_0002ZD CIL_0002ZD_0002 CGP 5:123577795-123721044

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005881 IDA cytoplasmic microtubule
GO:0008017 IDA microtubule binding
GO:0035371 IDA microtubule plus-end
GO:0044861 IMP protein transport into plasma membrane raft
GO:0051010 IDA microtubule plus-end binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000111509 CLIP1 (2 of 2)-201 protein_coding Danio_rerio 0 254
ENST00000302528 CLIP1-001 protein_coding Homo_sapiens 0 1146
ENST00000358808 CLIP1-201 protein_coding Homo_sapiens 0 1147
ENST00000361654 CLIP1-007 protein_coding Homo_sapiens 0 1242
ENST00000514271 CLIP1-011 retained_intron Homo_sapiens 0 686
ENST00000537004 CLIP1-006 protein_coding Homo_sapiens 0 1413
ENST00000537178 CLIP1-002 protein_coding Homo_sapiens 0 1147
ENST00000540304 CLIP1-005 protein_coding Homo_sapiens 0 2758
ENST00000540338 CLIP1-003 protein_coding Homo_sapiens 0 1103
ENST00000541108 CLIP1-004 nonsense_mediated_decay Homo_sapiens 0 1144
ENST00000541410 CLIP1-012 retained_intron Homo_sapiens 0 610
ENST00000545889 CLIP1-008 protein_coding Homo_sapiens 0 1109
ENST00000620786 CLIP1-202 protein_coding Homo_sapiens 0 1147

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