C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spermatogenesis associated 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000149834 Spata6-014 ENSMUSG00000034401 10090 + 4:111774799-111828194 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastOvaryPlacentaTestisENSMUST00000149834
Transcript ID Brain Breast Ovary Placenta Testis
ENSMUST00000149834 1.719±0.00 2.838±0.00 10.682±5.74 14.861±3.00 888.836±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UZ CIL_0008UZ_0002 VISTA 4:111252851-111853446

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000371841 SPATA6-005 protein_coding Homo_sapiens 0 710
ENST00000371843 SPATA6-002 protein_coding Homo_sapiens 0 819
ENST00000371847 SPATA6-001 protein_coding Homo_sapiens 0 819
ENST00000396199 SPATA6-201 protein_coding Homo_sapiens 0 819
ENST00000463938 SPATA6-003 processed_transcript Homo_sapiens 0 503
ENST00000490850 SPATA6-004 processed_transcript Homo_sapiens 0 712
ENST00000603831 SPATA6-010 nonsense_mediated_decay Homo_sapiens 0 468

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