C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type XXVII, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000151992 Col27a1-005 ENSMUSG00000045672 10090 + 4:63330993-63334138 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalColonLiverOvaryPlacentaENSMUST00000151992
Transcript ID Adipose Adrenal Colon Liver Ovary Placenta
ENSMUST00000151992 4.325±0.00 5.257±0.00 3.112±0.00 1.646±0.00 9.463±3.27 0.851±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AD CIL_0008AD_0002 VISTA 4:62756998-63358386
CIL_0004P5 CIL_0004P5_0002 CGP 4:63165634-63334991
CIL_0004P4 CIL_0004P4_0002 CGP 4:63214004-63348163

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000356083 COL27A1-001 protein_coding Homo_sapiens 0 562
ENST00000468565 COL27A1-003 processed_transcript Homo_sapiens 0 562
ENST00000494090 COL27A1-002 nonsense_mediated_decay Homo_sapiens 0 562

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