C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type XXVII, alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000045672 Col27a1 10090 + 4:63214004-63334991 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000036300 Col27a1-001 63215435-63334991 protein_coding
  ENSMUST00000125504 Col27a1-002 63214004-63292831 retained_intron
  ENSMUST00000148751 Col27a1-003 63215412-63275093 retained_intron
  ENSMUST00000149856 Col27a1-006 63283513-63333749 retained_intron
  ENSMUST00000151992 Col27a1-005 63330993-63334138 processed_transcript
  ENSMUST00000183913 Col27a1-007 63282667-63333720 nonsense_mediated_decay
  ENSMUST00000184067 Col27a1-004 63234286-63333713 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000036300ENSMUST00000125504ENSMUST00000148751ENSMUST00000149856ENSMUST00000151992ENSMUST00000183913ENSMUST00000184067
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000036300 1.020±0.62 1.645±0.19 1.361±0.00 0.417±0.16 1.210±0.52 2.038±0.69 0.414±0.24 4.480±2.31 1.246±0.72 1.646±0.80 0.332±0.05 3.266±1.33 1.142±0.20 0.979±0.39
ENSMUST00000125504 N/A N/A N/A N/A 0.192±0.00 N/A N/A N/A N/A N/A N/A N/A 0.031±0.00 N/A
ENSMUST00000148751 N/A N/A N/A N/A N/A N/A 0.119±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149856 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.802±0.53
ENSMUST00000151992 4.325±0.00 5.257±0.00 N/A N/A N/A 3.112±0.00 N/A N/A 1.646±0.00 N/A N/A 9.463±3.27 0.851±0.00 N/A
ENSMUST00000183913 1.570±0.15 2.340±0.34 1.443±0.00 0.616±0.00 2.108±0.25 2.869±0.52 0.357±0.00 3.225±0.87 1.187±0.32 1.211±0.00 0.171±0.04 4.132±0.60 0.784±0.00 4.504±2.34
ENSMUST00000184067 N/A N/A N/A 1.636±0.00 N/A N/A N/A N/A N/A N/A N/A 3.142±0.00 0.575±0.28 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AD CIL_0008AD_0002 VISTA 4:62756998-63358386
CIL_0004P5 CIL_0004P5_0002 CGP 4:63165634-63334991
CIL_0004P4 CIL_0004P4_0002 CGP 4:63214004-63348163

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003431 IMP growth plate cartilage chondrocyte development
GO:0005201 IDA extracellular matrix structural constituent
GO:0005583 IDA fibrillar collagen trimer
GO:0030198 IMP extracellular matrix organization
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000028236 col27a1b collagen, type XXVII, alpha 1b protein_coding Danio_rerio
ENSDARG00000034373 col27a1a collagen, type XXVII, alpha 1a protein_coding Danio_rerio
ENSG00000196739 COL27A1 collagen, type XXVII, alpha 1 protein_coding Homo_sapiens

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