C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type XXVII, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000356083 COL27A1-001 ENSG00000196739 9606 + 9:114155560-114312511 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000356083
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000356083 3.842±0.00 1.449±0.00 0.176±0.14 0.413±0.00 1.156±0.00 0.724±0.00 1.516±0.93 0.638±0.00 0.651±0.55 4.959±2.07 3.658±1.07 0.605±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AD CIL_0008AD_0001 VISTA 9:113664156-114265533
CIL_0004P5 CIL_0004P5_0001 CGP 9:114086126-114312511
CIL_0004P4 CIL_0004P4_0001 CGP 9:114155560-114326475

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003431 IEA growth plate cartilage chondrocyte development
GO:0005201 IEA extracellular matrix structural constituent
GO:0005576 TAS extracellular region
GO:0005581 IEA collagen trimer
GO:0005583 IEA fibrillar collagen trimer
GO:0005788 TAS endoplasmic reticulum lumen
GO:0030198 TAS extracellular matrix organization
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000036300 Col27a1-001 protein_coding Mus_musculus 0 4359
ENSMUST00000184067 Col27a1-004 nonsense_mediated_decay Mus_musculus 0 3068
ENSMUST00000149856 Col27a1-006 retained_intron Mus_musculus 0 2134
ENSMUST00000183913 Col27a1-007 nonsense_mediated_decay Mus_musculus 0 1688
ENSMUST00000125504 Col27a1-002 retained_intron Mus_musculus 0 1419
ENSMUST00000148751 Col27a1-003 retained_intron Mus_musculus 0 1151
ENSMUST00000151992 Col27a1-005 processed_transcript Mus_musculus 0 562
ENSDART00000097297 col27a1b-201 protein_coding Danio_rerio 0 198
ENSDART00000137363 col27a1b-001 protein_coding Danio_rerio 9.99995e-41 174

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