C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type XXVII, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000494090 COL27A1-002 ENSG00000196739 9606 + 9:114168608-114311548 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyMuscleOvaryPlacentaENST00000494090
Transcript ID Adrenal Brain Breast Colon Kidney Muscle Ovary Placenta
ENST00000494090 3.434±0.00 0.106±0.00 0.335±0.10 0.206±0.00 0.913±0.00 0.059±0.00 1.809±0.41 1.395±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AD CIL_0008AD_0001 VISTA 9:113664156-114265533
CIL_0004P5 CIL_0004P5_0001 CGP 9:114086126-114312511
CIL_0004P4 CIL_0004P4_0001 CGP 9:114155560-114326475

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000036300 Col27a1-001 protein_coding Mus_musculus 0 3976
ENSMUST00000184067 Col27a1-004 nonsense_mediated_decay Mus_musculus 0 2861
ENSMUST00000149856 Col27a1-006 retained_intron Mus_musculus 0 2134
ENSMUST00000183913 Col27a1-007 nonsense_mediated_decay Mus_musculus 0 1688
ENSMUST00000125504 Col27a1-002 retained_intron Mus_musculus 0 1158
ENSMUST00000148751 Col27a1-003 retained_intron Mus_musculus 0 593
ENSMUST00000151992 Col27a1-005 processed_transcript Mus_musculus 0 562

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