C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004P4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000196739-ENSG00000229314 CGP 9606 9:114155560-114326475
GeneTranscriptPositionBiotype
ENSG00000196739 (COL27A1)
collagen, type XXVII, alpha 1 		ENST00000356083 (COL27A1-001) 114155560-114312511 protein_coding
ENST00000451716 (COL27A1-004) 114167715-114218579 protein_coding
ENST00000468565 (COL27A1-003) 114307032-114311528 processed_transcript
ENST00000477421 (COL27A1-006) 114268807-114274230 processed_transcript
ENST00000485397 (COL27A1-005) 114240220-114246121 retained_intron
ENST00000490831 (COL27A1-008) 114306213-114309339 processed_transcript
ENST00000494090 (COL27A1-002) 114168608-114311548 nonsense_mediated_decay
ENST00000494780 (COL27A1-007) 114300362-114301542 processed_transcript
ENSG00000229314 (ORM1)
orosomucoid 1 		ENST00000259396 (ORM1-001) 114323056-114326475 protein_coding
ENST00000477456 (ORM1-002) 114323766-114325251 processed_transcript
CIL_0004P4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000045672-ENSMUSG00000039196 CGP 10090 4:63214004-63348163
GeneTranscriptPositionBiotype
ENSMUSG00000039196 (Orm1)
orosomucoid 1 		ENSMUST00000030044 (Orm1-001) 63344560-63348163 protein_coding
ENSMUSG00000045672 (Col27a1)
collagen, type XXVII, alpha 1 		ENSMUST00000036300 (Col27a1-001) 63215435-63334991 protein_coding
ENSMUST00000125504 (Col27a1-002) 63214004-63292831 retained_intron
ENSMUST00000148751 (Col27a1-003) 63215412-63275093 retained_intron
ENSMUST00000149856 (Col27a1-006) 63283513-63333749 retained_intron
ENSMUST00000151992 (Col27a1-005) 63330993-63334138 processed_transcript
ENSMUST00000183913 (Col27a1-007) 63282667-63333720 nonsense_mediated_decay
ENSMUST00000184067 (Col27a1-004) 63234286-63333713 nonsense_mediated_decay

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004P4_0001ENSG00000196739ENST00000356083ENST00000451716ENST00000468565ENST00000477421ENST00000485397ENST00000490831ENST00000494090ENST00000494780ENSG00000229314ENST00000259396ENST00000477456CIL_0004P4_0002ENSMUSG00000039196ENSMUST00000030044ENSMUSG00000045672ENSMUST00000036300ENSMUST00000125504ENSMUST00000148751ENSMUST00000149856ENSMUST00000151992ENSMUST00000183913ENSMUST00000184067
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004P4_0001ENSG00000196739ENST00000356083ENST00000451716ENST00000468565ENST00000494090ENSG00000229314ENST00000259396ENST00000477456CIL_0004P4_0002ENSMUSG00000039196ENSMUST00000030044ENSMUSG00000045672ENSMUST00000036300ENSMUST00000125504ENSMUST00000148751ENSMUST00000149856ENSMUST00000151992ENSMUST00000183913ENSMUST00000184067
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000196739 ENST00000356083 N/A 3.842±0.00 1.449±0.00 0.176±0.14 0.413±0.00 1.156±0.00 0.724±0.00 1.516±0.93 0.638±0.00 0.651±0.55 N/A 4.959±2.07 3.658±1.07 0.605±0.00
ENST00000451716 N/A N/A 1.176±0.00 N/A 0.339±0.00 0.544±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468565 N/A N/A N/A 0.049±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477421 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485397 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490831 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494090 N/A 3.434±0.00 N/A 0.106±0.00 0.335±0.10 0.206±0.00 N/A 0.913±0.00 N/A N/A 0.059±0.00 1.809±0.41 1.395±0.15 N/A
ENST00000494780 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000229314 ENST00000259396 1.413±0.00 0.035±0.00 0.507±0.00 0.264±0.21 8.484±0.00 0.147±0.00 0.187±0.00 4066.240±0.00 0.428±0.00 0.920±0.19 0.595±0.00 0.853±0.84 0.624±0.28 0.173±0.13
ENST00000477456 2.277±0.00 0.470±0.00 0.180±0.00 0.266±0.00 0.053±0.00 N/A 0.218±0.00 0.051±0.00 N/A 0.424±0.00 0.257±0.00 N/A 0.314±0.00 0.220±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000039196 ENSMUST00000030044 194.319±129.46 21.585±4.89 4.283±1.41 0.024±0.00 76.768±19.84 0.560±0.18 1.687±0.74 4.661±0.83 318.401±290.18 2.807±0.88 0.649±0.68 8.220±9.17 0.732±0.67 0.695±0.93
ENSMUSG00000045672 ENSMUST00000036300 1.020±0.62 1.645±0.19 1.361±0.00 0.417±0.16 1.210±0.52 2.038±0.69 0.414±0.24 4.480±2.31 1.246±0.72 1.646±0.80 0.332±0.05 3.266±1.33 1.142±0.20 0.979±0.39
ENSMUST00000125504 N/A N/A N/A N/A 0.192±0.00 N/A N/A N/A N/A N/A N/A N/A 0.031±0.00 N/A
ENSMUST00000148751 N/A N/A N/A N/A N/A N/A 0.119±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149856 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.802±0.53
ENSMUST00000151992 4.325±0.00 5.257±0.00 N/A N/A N/A 3.112±0.00 N/A N/A 1.646±0.00 N/A N/A 9.463±3.27 0.851±0.00 N/A
ENSMUST00000183913 1.570±0.15 2.340±0.34 1.443±0.00 0.616±0.00 2.108±0.25 2.869±0.52 0.357±0.00 3.225±0.87 1.187±0.32 1.211±0.00 0.171±0.04 4.132±0.60 0.784±0.00 4.504±2.34
ENSMUST00000184067 N/A N/A N/A 1.636±0.00 N/A N/A N/A N/A N/A N/A N/A 3.142±0.00 0.575±0.28 N/A

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