C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) II (DNA directed) polypeptide E
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000152843 Polr2e-005 ENSMUSG00000004667 10090 - 10:80036175-80039701 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonOvaryPlacentaENSMUST00000152843
Transcript ID Bladder Brain Colon Ovary Placenta
ENSMUST00000152843 12.076±0.00 17.457±5.48 15.864±1.34 25.545±11.69 17.535±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0002 VISTA 10:79539861-80142369
CIL_00030S CIL_00030S_0002 CGP 10:80016653-80039795
CIL_0000QU CIL_0000QU_0002 CGP 10:80035949-80056439

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000035670 polr2eb-001 protein_coding Danio_rerio 0 388
ENSDART00000141439 polr2eb-003 retained_intron Danio_rerio 0 231
ENST00000215587 POLR2E-012 nonsense_mediated_decay Homo_sapiens 0 643
ENST00000525414 RP11-344L21.1-001 processed_pseudogene Homo_sapiens 0 497
ENST00000585838 POLR2E-014 protein_coding Homo_sapiens 0 368
ENST00000586746 POLR2E-010 protein_coding Homo_sapiens 0 643
ENST00000586817 POLR2E-003 retained_intron Homo_sapiens 0 568
ENST00000589737 POLR2E-006 nonsense_mediated_decay Homo_sapiens 0 368
ENST00000590060 POLR2E-007 nonsense_mediated_decay Homo_sapiens 0 342
ENST00000591709 POLR2E-005 retained_intron Homo_sapiens 0 462
ENST00000591767 POLR2E-002 nonsense_mediated_decay Homo_sapiens 0 363
ENST00000592597 POLR2E-004 retained_intron Homo_sapiens 0 281
ENST00000612655 POLR2E-013 protein_coding Homo_sapiens 0 643
ENST00000614705 POLR2E-011 processed_transcript Homo_sapiens 0 617
ENST00000615234 POLR2E-001 protein_coding Homo_sapiens 0 643
ENST00000619917 POLR2E-009 protein_coding Homo_sapiens 0 462

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