C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histidyl-tRNA synthetase 2, mitochondrial (putative)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000152954 Hars2-001 ENSMUSG00000019143 10090 + 18:36783008-36792562 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000152954
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000152954 3.979±0.98 3.193±0.43 7.074±0.45 6.990±0.18 2.591±0.39 2.849±0.38 2.568±0.57 4.234±0.63 4.583±0.89 3.750±0.32 2.818±0.51 5.298±2.21 7.544±1.89 1.699±0.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006ZJ CIL_0006ZJ_0002 CGP 18:36763671-36783205
CIL_0006ZR CIL_0006ZR_0002 CGP 18:36766530-36792562
CIL_0006ZQ CIL_0006ZQ_0002 CGP 18:36783008-36799660

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004821 IEA histidine-tRNA ligase activity
GO:0005524 IEA ATP binding
GO:0005739 IDA mitochondrion
GO:0006427 IEA histidyl-tRNA aminoacylation
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000230771 HARS2-001 protein_coding Homo_sapiens 0 1644
ENST00000448069 HARS2-004 protein_coding Homo_sapiens 0 891
ENST00000508522 HARS2-003 protein_coding Homo_sapiens 0 1450
ENST00000510104 HARS2-002 nonsense_mediated_decay Homo_sapiens 0 575
ENST00000513688 HARS2-011 retained_intron Homo_sapiens 0 647

Loading