C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: INO80 complex subunit C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000153360 Ino80c-001 ENSMUSG00000047989 10090 - 18:24104757-24121953 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000153360
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000153360 9.195±1.94 3.901±0.37 5.281±0.39 6.141±0.28 6.913±1.35 3.754±0.53 4.711±1.02 6.120±0.49 6.298±4.04 7.556±0.75 12.821±0.36 4.733±1.65 13.164±4.15 11.207±3.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002FM CIL_0002FM_0003 CGP 18:24104757-24286818

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0006281 IEA DNA repair
GO:0006310 IEA DNA recombination
GO:0006338 IEA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process
GO:0031011 IEA Ino80 complex
GO:0071339 ISS MLL1 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000283410 INO80C-004 retained_intron Homo_sapiens 0 420
ENST00000334598 INO80C-001 protein_coding Homo_sapiens 0 795
ENST00000441607 INO80C-002 protein_coding Homo_sapiens 0 640
ENST00000586449 INO80C-007 nonsense_mediated_decay Homo_sapiens 0 230
ENST00000586489 INO80C-009 protein_coding Homo_sapiens 0 571
ENST00000591139 INO80C-011 protein_coding Homo_sapiens 0 442
ENST00000592173 INO80C-003 protein_coding Homo_sapiens 0 520

Loading