C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptojanin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000357345 SYNJ1-201 ENSG00000159082 9606 - 21:32628759-32727939 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENST00000357345
Transcript ID Brain
ENST00000357345 5.767±1.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TI CIL_0008TI_0001 VISTA 21:32549146-33151638
CIL_00087M CIL_00087M_0001 VISTA 21:32616647-33220574
CIL_0009BQ CIL_0009BQ_0001 VISTA 21:32618474-33219807
CIL_000089 CIL_000089_0001 CGP 21:32628759-32771858

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0004439 ISS phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity
GO:0004445 TAS inositol-polyphosphate 5-phosphatase activity
GO:0005829 TAS cytosol
GO:0006644 TAS phospholipid metabolic process
GO:0006661 TAS phosphatidylinositol biosynthetic process
GO:0006796 TAS phosphate-containing compound metabolic process
GO:0006836 ISS neurotransmitter transport
GO:0008219 IEA cell death
GO:0016082 ISS synaptic vesicle priming
GO:0016191 ISS synaptic vesicle uncoating
GO:0030117 ISS membrane coat
GO:0034595 ISS phosphatidylinositol phosphate 5-phosphatase activity
GO:0042578 IEA phosphoric ester hydrolase activity
GO:0043647 TAS inositol phosphate metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0046488 ISS phosphatidylinositol metabolic process
GO:0046855 ISS inositol phosphate dephosphorylation
GO:0046856 ISS:IEA phosphatidylinositol dephosphorylation
GO:0048488 ISS synaptic vesicle endocytosis
GO:0048489 ISS synaptic vesicle transport
GO:1901632 TAS regulation of synaptic vesicle membrane organization
GO:1903390 TAS positive regulation of synaptic vesicle uncoating

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170853 Synj1-201 protein_coding Mus_musculus 0 4207
ENSMUST00000118390 Synj1-003 protein_coding Mus_musculus 0 4191
ENSMUST00000121759 Synj1-002 protein_coding Mus_musculus 0 4191
ENSMUST00000118246 Synj1-001 retained_intron Mus_musculus 0 3131
ENSMUST00000130813 Synj1-010 protein_coding Mus_musculus 0 2532
ENSMUST00000154276 Synj1-011 protein_coding Mus_musculus 0 1031
ENSMUST00000156140 Synj1-004 retained_intron Mus_musculus 0 239

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