C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptojanin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000382491 SYNJ1-202 ENSG00000159082 9606 - 21:32628759-32728040 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeColonKidneyLungOvaryPlacentaTestisENST00000382491
Transcript ID Adipose Colon Kidney Lung Ovary Placenta Testis
ENST00000382491 1.575±0.00 0.897±0.00 0.940±0.74 0.773±0.16 0.603±0.34 0.197±0.00 1.728±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TI CIL_0008TI_0001 VISTA 21:32549146-33151638
CIL_00087M CIL_00087M_0001 VISTA 21:32616647-33220574
CIL_0009BQ CIL_0009BQ_0001 VISTA 21:32618474-33219807
CIL_000089 CIL_000089_0001 CGP 21:32628759-32771858

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0042578 IEA phosphoric ester hydrolase activity
GO:0046856 IEA phosphatidylinositol dephosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121759 Synj1-002 protein_coding Mus_musculus 0 4089
ENSMUST00000118390 Synj1-003 protein_coding Mus_musculus 0 3995
ENSMUST00000170853 Synj1-201 protein_coding Mus_musculus 0 3960
ENSMUST00000118246 Synj1-001 retained_intron Mus_musculus 0 3280
ENSMUST00000130813 Synj1-010 protein_coding Mus_musculus 0 2682
ENSMUST00000154276 Synj1-011 protein_coding Mus_musculus 0 243
ENSMUST00000156140 Synj1-004 retained_intron Mus_musculus 0 235

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