C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptojanin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000438952 SYNJ1-003 ENSG00000159082 9606 - 21:32628763-32645710 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000438952
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000438952 1.329±0.00 0.911±0.00 16.271±0.00 1.238±0.00 1.018±0.00 0.682±0.00 2.797±0.00 0.759±0.00 1.386±0.00 1.157±0.00 0.389±0.00 1.226±0.38 0.966±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TI CIL_0008TI_0001 VISTA 21:32549146-33151638
CIL_00087M CIL_00087M_0001 VISTA 21:32616647-33220574
CIL_0009BQ CIL_0009BQ_0001 VISTA 21:32618474-33219807
CIL_000089 CIL_000089_0001 CGP 21:32628759-32771858

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000154276 Synj1-011 protein_coding Mus_musculus 0 1031
ENSMUST00000170853 Synj1-201 protein_coding Mus_musculus 0 243
ENSMUST00000121759 Synj1-002 protein_coding Mus_musculus 0 243

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