C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: intraflagellar transport 80
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000154741 Ift80-006 ENSMUSG00000027778 10090 - 3:68963635-69004477 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004JR CIL_0004JR_0003 CGP 3:68892499-69034623

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001649 IGI osteoblast differentiation
GO:0002062 IGI chondrocyte differentiation
GO:0003674 ND molecular_function
GO:0005813 IDA centrosome
GO:0005929 IDA cilium
GO:0007224 IMP smoothened signaling pathway
GO:0030992 IDA intraciliary transport particle B
GO:0036064 ISO ciliary basal body
GO:0042073 IC intraciliary transport
GO:0042384 IMP cilium assembly
GO:0045880 IMP positive regulation of smoothened signaling pathway
GO:0050680 IMP negative regulation of epithelial cell proliferation
GO:0060271 IMP cilium morphogenesis
GO:0060349 IMP bone morphogenesis
GO:2000051 IGI negative regulation of non-canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000326448 IFT80-001 protein_coding Homo_sapiens 0 824
ENST00000465537 IFT80-022 protein_coding Homo_sapiens 0 743
ENST00000468218 IFT80-015 protein_coding Homo_sapiens 0 399
ENST00000468327 IFT80-021 processed_transcript Homo_sapiens 0 438
ENST00000472773 IFT80-016 processed_transcript Homo_sapiens 0 549
ENST00000475677 IFT80-008 protein_coding Homo_sapiens 0 518
ENST00000477495 IFT80-013 processed_transcript Homo_sapiens 0 549
ENST00000478370 IFT80-014 protein_coding Homo_sapiens 0 438
ENST00000478460 IFT80-017 processed_transcript Homo_sapiens 0 241
ENST00000482317 IFT80-019 nonsense_mediated_decay Homo_sapiens 0 231
ENST00000483465 IFT80-004 protein_coding Homo_sapiens 0 732
ENST00000483754 RP11-432B6.3-001 nonsense_mediated_decay Homo_sapiens 0 278
ENST00000484963 IFT80-023 nonsense_mediated_decay Homo_sapiens 0 219
ENST00000486856 IFT80-020 protein_coding Homo_sapiens 0 315
ENST00000487943 IFT80-003 retained_intron Homo_sapiens 0 457
ENST00000489004 IFT80-012 protein_coding Homo_sapiens 0 457
ENST00000496589 IFT80-002 protein_coding Homo_sapiens 0 732
ENST00000498409 IFT80-009 protein_coding Homo_sapiens 0 710

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