C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 38
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000155512 Rbm38-002 ENSMUSG00000027510 10090 + 2:173021913-173034728 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastLiverOvaryPlacentaENSMUST00000155512
Transcript ID Adrenal Brain Breast Liver Ovary Placenta
ENSMUST00000155512 3.669±0.54 0.125±0.00 12.203±0.74 16.109±0.00 1.492±0.00 2.104±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YW CIL_0008YW_0002 VISTA 2:172561962-173164167
CIL_0008TD CIL_0008TD_0002 VISTA 2:172564603-173165839
CIL_0008HJ CIL_0008HJ_0002 VISTA 2:172734798-173336840
CIL_0008BA CIL_0008BA_0002 VISTA 2:172748983-173356071
CIL_00030G CIL_00030G_0002 CGP 2:173020498-173119525

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000342690 RBM38-005 nonsense_mediated_decay Homo_sapiens 0 278
ENST00000344785 RBM38-003 nonsense_mediated_decay Homo_sapiens 0 300
ENST00000356208 RBM38-001 protein_coding Homo_sapiens 0 326
ENST00000440234 RBM38-004 protein_coding Homo_sapiens 0 326

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