C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: dead end homolog 1 (zebrafish)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000155827 Dnd1-002 ENSMUSG00000044595 10090 - 18:36763671-36766214 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonLungOvaryTestisENSMUST00000155827
Transcript ID Colon Lung Ovary Testis
ENSMUST00000155827 1.045±0.00 0.557±0.00 1.467±0.00 1.884±1.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006ZH CIL_0006ZH_0002 CGP 18:36744656-36763708
CIL_0006ZK CIL_0006ZK_0002 CGP 18:36760239-36766214
CIL_0006ZJ CIL_0006ZJ_0002 CGP 18:36763671-36783205

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000358337 WDR55-001 protein_coding Homo_sapiens 0 501
ENST00000504156 HARS-001 protein_coding Homo_sapiens 0 200
ENST00000504897 WDR55-004 nonsense_mediated_decay Homo_sapiens 0 211
ENST00000506393 WDR55-003 nonsense_mediated_decay Homo_sapiens 0 460
ENST00000511232 WDR55-002 retained_intron Homo_sapiens 0 460
ENST00000520764 WDR55-006 processed_transcript Homo_sapiens 0 460
ENST00000542735 DND1-001 protein_coding Homo_sapiens 0 920
ENST00000571422 RP11-259G18.3-001 processed_pseudogene Homo_sapiens 0 778
ENST00000580842 DND1P1-001 processed_pseudogene Homo_sapiens 0 784

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