C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000159329 Slc24a4-002 ENSMUSG00000041771 10090 + 12:102128733-102267091 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENSMUST00000159329
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENSMUST00000159329 0.071±0.06 0.158±0.10 0.005±0.00 0.114±0.00 0.038±0.02 0.025±0.02 0.079±0.03 0.031±0.01 2.173±0.04 0.011±0.00 0.599±0.43 0.028±0.01 0.070±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002N4 CIL_0002N4_0003 CGP 12:101975974-102267091
CIL_000539 CIL_000539_0002 CGP 12:102128733-102390855

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005432 ISA calcium:sodium antiporter activity
GO:0005887 IC integral component of plasma membrane
GO:0008273 ISA calcium, potassium:sodium antiporter activity
GO:0035725 ISA sodium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000157286 si:ch73-335m24.5-201 protein_coding Danio_rerio 1e-33 150
ENSDART00000112438 si:ch73-335m24.5-001 protein_coding Danio_rerio 1e-33 150
ENST00000393265 SLC24A4-003 protein_coding Homo_sapiens 0 1040
ENST00000525557 SLC24A4-007 protein_coding Homo_sapiens 0 1611
ENST00000526482 SLC24A4-005 retained_intron Homo_sapiens 0 1040
ENST00000531433 SLC24A4-002 protein_coding Homo_sapiens 0 2030
ENST00000532405 SLC24A4-001 protein_coding Homo_sapiens 0 1040
ENST00000554925 SLC24A4-008 retained_intron Homo_sapiens 0 1040

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