C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000159362 Trmu-008 ENSMUSG00000022386 10090 + 15:85894751-85897059 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartLungOvaryPlacentaENSMUST00000159362
Transcript ID Adipose Adrenal Brain Breast Heart Lung Ovary Placenta
ENSMUST00000159362 2.446±0.00 2.482±0.46 3.668±0.00 3.033±0.46 1.617±0.00 3.210±0.39 3.653±0.54 1.085±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008BF CIL_0008BF_0002 VISTA 15:85812646-86415385
CIL_00024F CIL_00024F_0002 CGP 15:85859707-85897394
CIL_00024N CIL_00024N_0002 CGP 15:85879312-86033777

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000290846 TRMU-001 protein_coding Homo_sapiens 0 292
ENST00000381019 TRMU-007 protein_coding Homo_sapiens 0 292
ENST00000381021 TRMU-004 nonsense_mediated_decay Homo_sapiens 0 292
ENST00000441818 TRMU-002 nonsense_mediated_decay Homo_sapiens 0 292
ENST00000453630 TRMU-005 nonsense_mediated_decay Homo_sapiens 0 292
ENST00000456595 TRMU-003 nonsense_mediated_decay Homo_sapiens 0 292
ENST00000457572 TRMU-006 nonsense_mediated_decay Homo_sapiens 0 292
ENST00000470831 TRMU-010 retained_intron Homo_sapiens 0 195
ENST00000485559 TRMU-009 retained_intron Homo_sapiens 9.99967e-42 176
ENST00000491612 TRMU-008 retained_intron Homo_sapiens 0 313

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