C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger protein 558
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000601372 ZNF558-001 ENSG00000167785 9606 - 19:8806170-8832328 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonLungOvaryPlacentaTestisENST00000601372
Transcript ID Bladder Brain Breast Colon Lung Ovary Placenta Testis
ENST00000601372 0.085±0.00 0.300±0.15 0.309±0.13 0.270±0.00 0.251±0.00 0.857±0.00 0.083±0.00 0.412±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000UU CIL_0000UU_0001 CGP 19:8806170-8843340

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005575 ND cellular_component
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034647 Zfp558-003 protein_coding Mus_musculus 0 1040
ENSMUST00000159596 Zfp558-001 nonsense_mediated_decay Mus_musculus 0 375
ENSMUST00000079642 Zfp119a-001 protein_coding Mus_musculus 3e-30 139
ENSMUST00000165640 Zfp113-201 protein_coding Mus_musculus 4e-24 119
ENSMUST00000049393 Zfp113-001 protein_coding Mus_musculus 4e-24 119
ENSMUST00000109914 Zfp345-001 protein_coding Mus_musculus 0.00000000000005 86
ENSMUST00000109922 Gm14124-001 protein_coding Mus_musculus 0.00000000000005 86
ENSMUST00000109929 Gm14139-201 protein_coding Mus_musculus 0.0000000000002 84
ENSMUST00000109926 Gm14139-001 protein_coding Mus_musculus 0.0000000000002 84
ENSMUST00000054072 Zfp81-001 protein_coding Mus_musculus 0.00000000003 77
ENSMUST00000147630 Zfp97-001 protein_coding Mus_musculus 0.0000000001 75
ENSMUST00000127027 Zfp960-001 protein_coding Mus_musculus 0.000000001 71
ENSMUST00000108055 Kif24-001 protein_coding Mus_musculus 0.000000001 71
ENSMUST00000060063 Zfp846-201 protein_coding Mus_musculus 0.000000001 71
ENSMUST00000140668 Zfp846-001 nonsense_mediated_decay Mus_musculus 0.000000001 71
ENSMUST00000115557 Zfp846-002 protein_coding Mus_musculus 0.000000001 71
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.000000001 71
ENSMUST00000080987 Zfp869-201 protein_coding Mus_musculus 0.000000001 71
ENSMUST00000091481 Zfp72-201 protein_coding Mus_musculus 0.000000001 71
ENSMUST00000189556 St8sia4-004 protein_coding Mus_musculus 0.00000002 68
ENSMUST00000175682 Kdm2a-003 retained_intron Mus_musculus 0.00000006 66
ENSMUST00000049705 Zfp457-201 protein_coding Mus_musculus 0.0000002 64
ENSMUST00000093906 Birc5-002 protein_coding Mus_musculus 0.0000002 64
ENSMUST00000076281 Zfp781-201 protein_coding Mus_musculus 0.0000008 62
ENSMUST00000105316 Gm3055-201 protein_coding Mus_musculus 0.0000008 62
ENSMUST00000135387 Trim24-008 retained_intron Mus_musculus 0.000003 60
ENSMUST00000086274 Gm10490-201 protein_coding Mus_musculus 0.000003 60
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.000003 60
ENSMUST00000114937 Usp6nl-001 protein_coding Mus_musculus 0.000003 60
ENSMUST00000045969 Zfp458-201 protein_coding Mus_musculus 0.000003 60
ENSMUST00000146467 Ubxn6-005 retained_intron Mus_musculus 0.00001 58
ENSMUST00000151943 Ubxn6-002 retained_intron Mus_musculus 0.00001 58
ENSMUST00000132804 Ubxn6-003 retained_intron Mus_musculus 0.00001 58
ENSMUST00000156046 Znhit3-002 retained_intron Mus_musculus 0.00001 58
ENSMUST00000162226 Zbtb37-001 protein_coding Mus_musculus 0.00004 57
ENSMUST00000102975 Mob3b-001 protein_coding Mus_musculus 0.0001 55
ENSMUST00000159758 Osbpl9-016 retained_intron Mus_musculus 0.0001 55
ENSMUST00000189820 Atg9a-005 protein_coding Mus_musculus 0.0005 53

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