C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000159730 Trmu-003 ENSMUSG00000022386 10090 + 15:85894881-85897394 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryENSMUST00000159730
Transcript ID Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary
ENSMUST00000159730 1.030±0.24 1.839±0.00 1.835±0.00 0.883±0.00 1.151±0.27 0.759±0.00 0.574±0.05 1.113±0.12 0.393±0.00 1.752±0.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008BF CIL_0008BF_0002 VISTA 15:85812646-86415385
CIL_00024F CIL_00024F_0002 CGP 15:85859707-85897394
CIL_00024N CIL_00024N_0002 CGP 15:85879312-86033777

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000290846 TRMU-001 protein_coding Homo_sapiens 0 387
ENST00000381019 TRMU-007 protein_coding Homo_sapiens 1.00053e-42 178
ENST00000381021 TRMU-004 nonsense_mediated_decay Homo_sapiens 0 387
ENST00000441818 TRMU-002 nonsense_mediated_decay Homo_sapiens 0 387
ENST00000453630 TRMU-005 nonsense_mediated_decay Homo_sapiens 0 387
ENST00000456595 TRMU-003 nonsense_mediated_decay Homo_sapiens 1.99965e-42 178
ENST00000457572 TRMU-006 nonsense_mediated_decay Homo_sapiens 0 387
ENST00000470831 TRMU-010 retained_intron Homo_sapiens 2.8026e-45 187
ENST00000485559 TRMU-009 retained_intron Homo_sapiens 0 398
ENST00000491612 TRMU-008 retained_intron Homo_sapiens 9.99967e-42 176

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