C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type XXII, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000159993 Col22a1-001 ENSMUSG00000079022 10090 - 15:71795795-72034227 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000159993
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000159993 0.125±0.16 0.248±0.07 0.034±0.00 0.548±0.43 0.057±0.03 0.083±0.01 0.054±0.01 0.009±0.00 0.010±0.01 0.045±0.01 2.584±0.75 0.194±0.07 0.088±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004PS CIL_0004PS_0002 CGP 15:71445678-72034227
CIL_0004PZ CIL_0004PZ_0002 CGP 15:71795795-72546279

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000303045 COL22A1-001 protein_coding Homo_sapiens 0 2870
ENST00000341807 COL22A1-003 processed_transcript Homo_sapiens 0 2612
ENST00000435777 COL22A1-201 protein_coding Homo_sapiens 0 2929

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