C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: G patch domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000160481 Gpatch2-003 ENSMUSG00000039210 10090 + 1:187215511-187349640 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENSMUST00000160481
Transcript ID Testis
ENSMUST00000160481 5.227±0.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00086S CIL_00086S_0002 VISTA 1:186622310-187223505
CIL_0007JY CIL_0007JY_0002 UCNEbase 1:186701249-188943182
CIL_000994 CIL_000994_0002 VISTA 1:186948277-187549469

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000366934 GPATCH2-002 protein_coding Homo_sapiens 0 1127
ENST00000366935 GPATCH2-001 protein_coding Homo_sapiens 0 1153
ENST00000470014 GPATCH2-005 processed_transcript Homo_sapiens 3e-30 135
ENST00000485274 GPATCH2-003 processed_transcript Homo_sapiens 0.0000004 58
ENST00000489246 GPATCH2-004 processed_transcript Homo_sapiens 0.0000003 60

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