C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: G patch domain containing 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039210 Gpatch2 10090 + 1:187215508-187351704 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000044812 Gpatch2-007 187215544-187234339 protein_coding
  ENSMUST00000065573 Gpatch2-201 187215511-187351427 protein_coding
  ENSMUST00000097443 Gpatch2-002 187215508-187235831 protein_coding
  ENSMUST00000110943 Gpatch2-001 187215522-187351704 protein_coding
  ENSMUST00000159748 Gpatch2-008 187215546-187233901 nonsense_mediated_decay
  ENSMUST00000160471 Gpatch2-006 187215743-187350723 protein_coding
  ENSMUST00000160481 Gpatch2-003 187215511-187349640 nonsense_mediated_decay
  ENSMUST00000160570 Gpatch2-004 187226180-187351427 protein_coding
  ENSMUST00000161260 Gpatch2-005 187215538-187305043 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000065573ENSMUST00000097443ENSMUST00000110943ENSMUST00000160471ENSMUST00000160481ENSMUST00000160570
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000065573 1.566±0.72 0.529±0.00 2.370±0.01 2.932±0.05 1.285±0.24 2.749±0.55 0.689±0.29 1.324±0.46 1.618±0.50 1.430±0.15 1.257±0.31 2.441±0.61 2.852±0.56 8.722±0.57
ENSMUST00000097443 N/A 1.416±0.24 N/A N/A 1.354±0.17 2.572±0.51 0.656±0.06 1.109±0.08 1.811±0.32 1.811±0.08 0.754±0.00 2.914±0.00 1.741±0.18 N/A
ENSMUST00000110943 N/A N/A 1.420±0.18 1.461±0.00 N/A N/A 0.272±0.00 0.417±0.00 0.779±0.09 1.085±0.00 0.684±0.21 1.026±0.00 1.193±0.44 N/A
ENSMUST00000160471 N/A 0.724±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.388±0.00 N/A 1.702±0.00 5.135±1.33
ENSMUST00000160481 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.227±0.82
ENSMUST00000160570 3.671±1.15 2.618±1.19 1.429±0.00 2.867±0.68 3.128±1.85 3.921±1.95 0.834±0.31 2.340±1.00 1.586±0.73 1.982±0.05 0.621±0.16 2.688±0.81 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00086S CIL_00086S_0002 VISTA 1:186622310-187223505
CIL_0007JY CIL_0007JY_0002 UCNEbase 1:186701249-188943182
CIL_000994 CIL_000994_0002 VISTA 1:186948277-187549469

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003676 IEA nucleic acid binding
GO:0005575 ND cellular_component
GO:0010923 ISS negative regulation of phosphatase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000031064 gpatch2 G patch domain containing 2 protein_coding Danio_rerio
ENSG00000092978 GPATCH2 G patch domain containing 2 protein_coding Homo_sapiens

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