C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: G patch domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000366934 GPATCH2-002 ENSG00000092978 9606 - 1:217608184-217631082 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000366934
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000366934 0.555±0.00 1.078±0.00 0.870±0.00 1.010±0.60 1.922±1.12 2.237±0.56 0.466±0.07 0.854±0.31 1.730±1.44 2.267±1.71 0.226±0.01 2.261±0.83 0.821±0.06 1.877±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JY CIL_0007JY_0001 UCNEbase 1:215651193-218349979
CIL_000122 CIL_000122_0002 CGP 1:216503246-217631082
CIL_000994 CIL_000994_0001 VISTA 1:217292780-217894009

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0010923 IDA negative regulation of phosphatase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000044812 Gpatch2-007 protein_coding Mus_musculus 0 1441
ENSMUST00000065573 Gpatch2-201 protein_coding Mus_musculus 0 1127
ENSMUST00000160481 Gpatch2-003 nonsense_mediated_decay Mus_musculus 0 1127
ENSMUST00000097443 Gpatch2-002 protein_coding Mus_musculus 0 1127
ENSMUST00000110943 Gpatch2-001 protein_coding Mus_musculus 0 1123
ENSMUST00000160471 Gpatch2-006 protein_coding Mus_musculus 0 994
ENSMUST00000159748 Gpatch2-008 nonsense_mediated_decay Mus_musculus 0 861
ENSMUST00000161260 Gpatch2-005 retained_intron Mus_musculus 0 785
ENSMUST00000160570 Gpatch2-004 protein_coding Mus_musculus 0 350

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