C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: G patch domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000160570 Gpatch2-004 ENSMUSG00000039210 10090 + 1:187226180-187351427 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryENSMUST00000160570
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENSMUST00000160570 3.671±1.15 2.618±1.19 1.429±0.00 2.867±0.68 3.128±1.85 3.921±1.95 0.834±0.31 2.340±1.00 1.586±0.73 1.982±0.05 0.621±0.16 2.688±0.81

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00086S CIL_00086S_0002 VISTA 1:186622310-187223505
CIL_0007JY CIL_0007JY_0002 UCNEbase 1:186701249-188943182
CIL_000994 CIL_000994_0002 VISTA 1:186948277-187549469

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003676 IEA nucleic acid binding
GO:0005575 ND cellular_component

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000366934 GPATCH2-002 protein_coding Homo_sapiens 0 350
ENST00000366935 GPATCH2-001 protein_coding Homo_sapiens 0 802
ENST00000470014 GPATCH2-005 processed_transcript Homo_sapiens 0 193
ENST00000485274 GPATCH2-003 processed_transcript Homo_sapiens 6e-36 154
ENST00000489246 GPATCH2-004 processed_transcript Homo_sapiens 0.000001 58

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