C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000162010 Trmu-002 ENSMUSG00000022386 10090 + 15:85894207-85897392 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000162010
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000162010 4.661±0.68 1.559±0.38 3.539±0.00 5.390±0.00 4.186±0.59 3.722±1.40 4.166±0.95 5.573±1.45 3.886±1.06 3.442±0.41 2.827±0.00 5.831±1.50 4.083±0.31 3.336±0.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008BF CIL_0008BF_0002 VISTA 15:85812646-86415385
CIL_00024F CIL_00024F_0002 CGP 15:85859707-85897394
CIL_00024N CIL_00024N_0002 CGP 15:85879312-86033777

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000290846 TRMU-001 protein_coding Homo_sapiens 0 503
ENST00000381019 TRMU-007 protein_coding Homo_sapiens 0 294
ENST00000381021 TRMU-004 nonsense_mediated_decay Homo_sapiens 0 503
ENST00000441818 TRMU-002 nonsense_mediated_decay Homo_sapiens 0 503
ENST00000453630 TRMU-005 nonsense_mediated_decay Homo_sapiens 0 503
ENST00000456595 TRMU-003 nonsense_mediated_decay Homo_sapiens 0 294
ENST00000457572 TRMU-006 nonsense_mediated_decay Homo_sapiens 0 503
ENST00000470831 TRMU-010 retained_intron Homo_sapiens 6.99949e-42 176
ENST00000485559 TRMU-009 retained_intron Homo_sapiens 0 387
ENST00000491612 TRMU-008 retained_intron Homo_sapiens 0 292

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