C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stromal antigen 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000162245 Stag3-004 ENSMUSG00000036928 10090 + 5:138280544-138312393 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000162245
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000162245 0.216±0.07 0.019±0.00 0.103±0.01 0.568±0.16 0.048±0.02 0.176±0.00 0.081±0.03 0.019±0.00 0.147±0.12 0.009±0.00 0.217±0.16 3.851±2.32 60.511±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0002 VISTA 5:137705744-138314172
CIL_0005CH CIL_0005CH_0002 CGP 5:138264952-138312393

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000775 IEA chromosome, centromeric region
GO:0000794 IDA condensed nuclear chromosome
GO:0000795 IDA synaptonemal complex
GO:0000800 IDA lateral element
GO:0000802 IDA transverse filament
GO:0001673 IDA male germ cell nucleus
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0007065 ISS male meiosis sister chromatid cohesion
GO:0007066 ISS female meiosis sister chromatid cohesion
GO:0030893 IDA meiotic cohesin complex
GO:0034991 IDA nuclear meiotic cohesin complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000317296 STAG3-001 protein_coding Homo_sapiens 0 3038
ENST00000328453 GATS-011 nonsense_mediated_decay Homo_sapiens 0 196
ENST00000369872 SYPL2-001 protein_coding Homo_sapiens 0.0003 53
ENST00000394018 STAG3-003 protein_coding Homo_sapiens 0 2769
ENST00000426455 STAG3-004 protein_coding Homo_sapiens 0 3038
ENST00000436886 GATS-014 protein_coding Homo_sapiens 0 196
ENST00000440830 STAG3-006 processed_transcript Homo_sapiens 0 2111
ENST00000476057 STAG3-021 retained_intron Homo_sapiens 0 261
ENST00000477469 STAG3-016 retained_intron Homo_sapiens 0 318
ENST00000479359 STAG3-017 retained_intron Homo_sapiens 0 636
ENST00000491498 STAG3-020 processed_transcript Homo_sapiens 0 2111
ENST00000496157 STAG3-002 retained_intron Homo_sapiens 0 1672
ENST00000543273 GATS-002 nonsense_mediated_decay Homo_sapiens 0 196
ENST00000615138 STAG3-201 protein_coding Homo_sapiens 0 3053
ENST00000620100 STAG3-202 protein_coding Homo_sapiens 0 2769

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