C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LUC7-like 2 (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000163047 Luc7l2-004 ENSMUSG00000029823 10090 + 6:38551334-38605040 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000163047
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000163047 36.012±0.00 52.969±0.00 31.209±1.94 13.764±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00030D CIL_00030D_0002 CGP 6:38533502-38609470
CIL_00030E CIL_00030E_0002 CGP 6:38551334-38637239

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003729 IEA mRNA binding
GO:0005685 IEA U1 snRNP
GO:0006376 IEA mRNA splice site selection

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263545 C7orf55-LUC7L2-201 protein_coding Homo_sapiens 0 1182
ENST00000354926 C7orf55-LUC7L2-001 protein_coding Homo_sapiens 0 1182
ENST00000456182 C7orf55-LUC7L2-003 nonsense_mediated_decay Homo_sapiens 0 1184
ENST00000463912 C7orf55-LUC7L2-004 retained_intron Homo_sapiens 0 1044
ENST00000482860 C7orf55-LUC7L2-007 processed_transcript Homo_sapiens 0 287
ENST00000498518 C7orf55-LUC7L2-006 retained_intron Homo_sapiens 0 1182
ENST00000541170 C7orf55-LUC7L2-005 protein_coding Homo_sapiens 0 1182
ENST00000541515 LUC7L2-001 protein_coding Homo_sapiens 0 1182
ENST00000619796 C7orf55-LUC7L2-202 protein_coding Homo_sapiens 0 1184

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