C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: plexin A1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000163139 Plxna1-202 ENSMUSG00000030084 10090 - 6:89316316-89362613 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000163139
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000163139 22.738±2.83 37.545±3.57 11.215±1.42 22.577±22.83 18.801±8.65 13.183±2.16 7.450±0.83 11.563±1.27 2.069±0.62 43.150±20.88 3.127±0.71 36.148±12.83 9.815±3.78 7.107±3.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EC CIL_0008EC_0002 VISTA 6:88734676-89336253
CIL_0005JO CIL_0005JO_0002 CGP 6:89316316-89595652

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 TAS plasma membrane
GO:0014910 IMP regulation of smooth muscle cell migration
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0017154 IPI semaphorin receptor activity
GO:0060666 IDA dichotomous subdivision of terminal units involved in salivary gland branching
GO:0070062 IEA extracellular vesicular exosome
GO:0071526 IPI semaphorin-plexin signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000321063 PLXNA4-201 protein_coding Homo_sapiens 0 1393
ENST00000359827 PLXNA4-001 protein_coding Homo_sapiens 0 1393
ENST00000367033 PLXNA2-001 protein_coding Homo_sapiens 0 1430
ENST00000369682 PLXNA3-001 protein_coding Homo_sapiens 0 1550
ENST00000393409 PLXNA1-001 protein_coding Homo_sapiens 0 6704
ENST00000463510 PLXNA2-004 processed_transcript Homo_sapiens 0 294
ENST00000491066 PLXNA3-003 retained_intron Homo_sapiens 0 272
ENST00000496550 PLXNA4-005 retained_intron Homo_sapiens 0 401
ENST00000497802 PLXNA3-002 retained_intron Homo_sapiens 0 346
ENST00000503234 PLXNA1-002 retained_intron Homo_sapiens 0 1661
ENST00000505278 PLXNA1-004 processed_transcript Homo_sapiens 0 512

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