C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromodomain protein, Y chromosome-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000163595 Cdyl-202 ENSMUSG00000059288 10090 + 13:35741313-35874058 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000163595
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000163595 3.369±0.69 3.565±1.30 5.548±0.67 2.046±0.72 2.851±1.15 2.986±0.96 1.572±0.08 1.513±0.22 3.739±3.43 3.102±0.55 1.104±0.21 4.362±1.83 6.259±4.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003IM CIL_0003IM_0002 CGP 13:34977748-35874064
CIL_000162 CIL_000162_0003 CGP 13:35659862-35906359

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003714 ISS transcription corepressor activity
GO:0004402 IEA histone acetyltransferase activity
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016573 IEA histone acetylation
GO:0035064 ISS methylated histone binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000328908 CDYL-001 protein_coding Homo_sapiens 0 1796
ENST00000343762 CDYL-003 protein_coding Homo_sapiens 0 1794
ENST00000397588 CDYL-006 protein_coding Homo_sapiens 0 2111
ENST00000418290 CDY4P-001 processed_pseudogene Homo_sapiens 0 357
ENST00000440139 CDYL-009 protein_coding Homo_sapiens 0 621
ENST00000440972 SPRED2-007 protein_coding Homo_sapiens 0.000000004 66
ENST00000449732 CDYL-007 protein_coding Homo_sapiens 0 1790
ENST00000469671 CDYL-011 retained_intron Homo_sapiens 0 880
ENST00000472453 CDYL-008 processed_transcript Homo_sapiens 0 1238

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