C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: breakpoint cluster region
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000164107 Bcr-201 ENSMUSG00000009681 10090 + 10:75060896-75184923 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000164107
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000164107 6.227±1.11 3.428±2.18 9.428±0.28 21.947±2.37 4.440±2.13 4.375±2.09 1.384±0.34 6.563±1.54 2.869±1.06 12.074±1.70 0.858±0.24 7.812±3.41 8.910±3.13 3.040±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002X0 CIL_0002X0_0002 CGP 10:75037058-75184923
CIL_0001E0 CIL_0001E0_0002 CGP 10:75060896-75312399

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004674 IEA protein serine/threonine kinase activity
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005096 TAS GTPase activator activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0005829 IDA cytosol
GO:0005886 IDA plasma membrane
GO:0007420 IGI brain development
GO:0016020 IEA membrane
GO:0019899 IEA enzyme binding
GO:0030036 IGI actin cytoskeleton organization
GO:0030336 IGI negative regulation of cell migration
GO:0030675 IGI Rac GTPase activator activity
GO:0032496 IMP response to lipopolysaccharide
GO:0032855 IGI positive regulation of Rac GTPase activity
GO:0035556 IEA intracellular signal transduction
GO:0042472 IGI inner ear morphogenesis
GO:0043234 ISO protein complex
GO:0043314 IGI negative regulation of neutrophil degranulation
GO:0043547 TAS positive regulation of GTPase activity
GO:0046777 IEA protein autophosphorylation
GO:0048008 IEA platelet-derived growth factor receptor signaling pathway
GO:0050728 IMP negative regulation of inflammatory response
GO:0050766 IGI positive regulation of phagocytosis
GO:0050885 IGI neuromuscular process controlling balance
GO:0051726 IDA regulation of cell cycle
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000101282 bcr-001 protein_coding Danio_rerio 0 1478
ENST00000291107 ABR-003 protein_coding Homo_sapiens 0 891
ENST00000302538 ABR-001 protein_coding Homo_sapiens 0 891
ENST00000305877 BCR-001 protein_coding Homo_sapiens 0 4911
ENST00000359540 BCR-002 protein_coding Homo_sapiens 0 3603
ENST00000382243 BCRP3-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 937
ENST00000398241 BCRP2-002 retained_intron Homo_sapiens 0 215
ENST00000398512 BCR-201 protein_coding Homo_sapiens 0 1674
ENST00000412938 AC008132.13-002 processed_transcript Homo_sapiens 1.4013e-45 191
ENST00000414583 POM121L9P-001 processed_transcript Homo_sapiens 3e-39 169
ENST00000419722 BCR-016 processed_transcript Homo_sapiens 0 357
ENST00000427791 BCR-006 protein_coding Homo_sapiens 0 595
ENST00000436990 BCR-005 processed_transcript Homo_sapiens 0 784
ENST00000444246 BCRP1-001 unprocessed_pseudogene Homo_sapiens 0 592
ENST00000447763 BCRP2-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 795
ENST00000458056 BCR-020 processed_transcript Homo_sapiens 0 196
ENST00000461808 BCRP2-003 processed_transcript Homo_sapiens 0 337
ENST00000466076 BCR-015 retained_intron Homo_sapiens 0 403
ENST00000475025 BCR-019 processed_transcript Homo_sapiens 0 628
ENST00000479188 BCR-013 processed_transcript Homo_sapiens 0 374
ENST00000487968 BCR-012 retained_intron Homo_sapiens 0 732
ENST00000506079 BCRP4-001 unprocessed_pseudogene Homo_sapiens 0 909
ENST00000510112 BCRP6-001 unprocessed_pseudogene Homo_sapiens 0 784
ENST00000511549 BCRP7-001 unprocessed_pseudogene Homo_sapiens 0 689
ENST00000514371 BCRP5-001 unprocessed_pseudogene Homo_sapiens 0 313
ENST00000536794 ABR-026 protein_coding Homo_sapiens 0 701
ENST00000544583 ABR-004 protein_coding Homo_sapiens 0 891
ENST00000570441 ABR-030 protein_coding Homo_sapiens 0 255
ENST00000571945 ABR-025 protein_coding Homo_sapiens 5.60519e-45 185
ENST00000573325 ABR-028 retained_intron Homo_sapiens 8e-26 121
ENST00000573667 ABR-027 retained_intron Homo_sapiens 1e-39 167
ENST00000574437 ABR-002 protein_coding Homo_sapiens 0 891
ENST00000575934 ABR-029 protein_coding Homo_sapiens 9.80909e-45 183
ENST00000576964 ABR-020 processed_transcript Homo_sapiens 0 191
ENST00000611021 ABR-204 protein_coding Homo_sapiens 0 896
ENST00000611425 BCRP3-004 retained_intron Homo_sapiens 0 196
ENST00000612118 ABR-205 protein_coding Homo_sapiens 0 896
ENST00000613981 ABR-202 protein_coding Homo_sapiens 0 896
ENST00000614808 BCRP3-005 processed_transcript Homo_sapiens 1e-25 121
ENST00000619569 ABR-207 protein_coding Homo_sapiens 0 706
ENST00000620170 ABR-203 protein_coding Homo_sapiens 0 706
ENST00000620619 ABR-208 protein_coding Homo_sapiens 0 896
ENST00000621462 BCRP3-003 processed_transcript Homo_sapiens 0 196
ENST00000624908 BCRP2-004 retained_intron Homo_sapiens 0 191

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