C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002X0_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100228-ENSG00000186716 CGP 9606 22:23145326-23318037
GeneTranscriptPositionBiotype
ENSG00000100228 (RAB36)
RAB36, member RAS oncogene family 		ENST00000263116 (RAB36-001) 23145326-23164350 protein_coding
ENST00000341989 (RAB36-002) 23145366-23161564 protein_coding
ENST00000420895 (RAB36-003) 23150113-23156311 protein_coding
ENSG00000186716 (BCR)
breakpoint cluster region 		ENST00000305877 (BCR-001) 23180210-23318037 protein_coding
ENST00000359540 (BCR-002) 23180365-23315950 protein_coding
ENST00000398512 (BCR-201) 23180961-23318037 protein_coding
ENST00000419722 (BCR-016) 23289615-23310433 processed_transcript
ENST00000427791 (BCR-006) 23253960-23285114 protein_coding
ENST00000436990 (BCR-005) 23309474-23318034 processed_transcript
ENST00000458056 (BCR-020) 23312388-23314695 processed_transcript
ENST00000463770 (BCR-004) 23198253-23253833 processed_transcript
ENST00000466076 (BCR-015) 23283788-23287173 retained_intron
ENST00000471452 (BCR-017) 23295041-23302863 processed_transcript
ENST00000475025 (BCR-019) 23306745-23313999 processed_transcript
ENST00000478978 (BCR-018) 23306154-23310433 processed_transcript
ENST00000479188 (BCR-013) 23179704-23261428 processed_transcript
ENST00000480973 (BCR-014) 23251032-23261393 processed_transcript
ENST00000487679 (BCR-003) 23198332-23253833 processed_transcript
ENST00000487968 (BCR-012) 23283209-23291131 retained_intron
ENSG00000230701 (FBXW4P1)
F-box and WD repeat domain containing 4 pseudogene 1 		ENST00000426721 (FBXW4P1-001) 23262767-23265005 processed_pseudogene
ENSG00000236794 (BCRP8)
breakpoint cluster region pseudogene 8 		ENST00000412037 (BCRP8-001) 23179918-23180172 processed_pseudogene
ENSG00000240160 (RN7SL263P)
RNA, 7SL, cytoplasmic 263, pseudogene 		ENST00000467969 (RN7SL263P-201) 23261782-23262071 misc_RNA
CIL_0002X0_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020175-ENSMUSG00000009681 CGP 10090 10:75037058-75184923
GeneTranscriptPositionBiotype
ENSMUSG00000009681 (Bcr)
breakpoint cluster region 		ENSMUST00000164107 (Bcr-201) 75060896-75184923 protein_coding
ENSMUSG00000020175 (Rab36)
RAB36, member RAS oncogene family 		ENSMUST00000020391 (Rab36-002) 75037084-75054103 protein_coding
ENSMUST00000122815 (Rab36-006) 75037273-75046094 retained_intron
ENSMUST00000136944 (Rab36-003) 75037058-75048788 retained_intron
ENSMUST00000139384 (Rab36-007) 75037322-75050695 protein_coding
ENSMUST00000142507 (Rab36-004) 75037226-75047572 retained_intron
ENSMUST00000146440 (Rab36-005) 75037836-75054061 protein_coding
ENSMUST00000147802 (Rab36-001) 75037066-75054748 protein_coding
ENSMUST00000151432 (Rab36-008) 75038223-75050690 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002X0_0001ENSG00000100228ENST00000263116ENST00000341989ENST00000420895ENSG00000186716ENST00000305877ENST00000359540ENST00000398512ENST00000419722ENST00000427791ENST00000436990ENST00000458056ENST00000463770ENST00000466076ENST00000471452ENST00000475025ENST00000478978ENST00000479188ENST00000480973ENST00000487679ENST00000487968ENSG00000230701ENST00000426721ENSG00000236794ENST00000412037ENSG00000240160ENST00000467969CIL_0002X0_0002ENSMUSG00000009681ENSMUST00000164107ENSMUSG00000020175ENSMUST00000020391ENSMUST00000122815ENSMUST00000136944ENSMUST00000139384ENSMUST00000142507ENSMUST00000146440ENSMUST00000147802ENSMUST00000151432
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002X0_0001ENSG00000100228ENST00000263116ENST00000341989ENST00000420895ENSG00000186716ENST00000305877ENST00000359540ENST00000398512ENST00000419722ENST00000427791ENST00000436990ENST00000466076ENSG00000230701ENST00000426721ENSG00000236794ENST00000412037ENSG00000240160ENST00000467969CIL_0002X0_0002ENSMUSG00000009681ENSMUST00000164107ENSMUSG00000020175ENSMUST00000020391ENSMUST00000136944ENSMUST00000139384ENSMUST00000142507ENSMUST00000146440ENSMUST00000147802ENSMUST00000151432
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100228 ENST00000263116 N/A 1.712±0.00 1.394±0.00 1.718±0.39 1.301±0.00 0.110±0.00 0.137±0.13 3.445±0.00 0.412±0.32 1.797±0.70 0.081±0.06 3.599±0.73 2.283±0.57 1.656±0.53
ENST00000341989 N/A N/A N/A N/A 0.804±0.00 N/A N/A N/A N/A 1.766±0.00 N/A 0.872±0.00 N/A N/A
ENST00000420895 N/A N/A N/A N/A 0.861±0.00 N/A N/A N/A N/A N/A N/A 4.064±0.00 3.597±0.00 4.699±0.00
ENSG00000186716 ENST00000305877 2.648±0.00 N/A N/A 4.262±0.49 N/A 1.713±0.00 0.689±0.40 N/A 1.564±0.00 2.011±0.00 N/A 2.739±1.22 2.504±0.00 8.862±0.00
ENST00000359540 11.796±0.00 16.213±0.00 1.421±0.00 16.663±0.00 19.399±0.00 4.950±4.35 6.351±0.00 10.368±8.81 8.984±0.00 24.542±0.00 0.610±0.36 8.782±3.49 12.614±1.35 9.582±0.00
ENST00000398512 1.933±0.00 N/A N/A 2.930±0.00 N/A 1.374±0.00 0.849±0.00 N/A 1.180±0.00 4.563±0.00 0.310±0.12 5.252±0.63 3.035±0.77 3.054±0.00
ENST00000419722 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.250±0.00 12.588±0.00
ENST00000427791 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.462±0.00 N/A
ENST00000436990 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.134±0.00
ENST00000458056 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463770 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466076 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.110±0.00 N/A N/A N/A
ENST00000471452 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475025 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478978 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480973 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487679 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487968 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000230701 ENST00000426721 0.483±0.00 0.714±0.00 0.297±0.00 0.197±0.18 0.143±0.08 0.119±0.07 0.096±0.05 0.163±0.11 0.104±0.01 0.577±0.32 0.121±0.00 0.223±0.14 0.270±0.07 0.322±0.00
ENSG00000236794 ENST00000412037 N/A 0.139±0.00 N/A N/A 0.317±0.00 N/A N/A 0.298±0.00 0.125±0.00 N/A N/A N/A 0.360±0.00 N/A
ENSG00000240160 ENST00000467969 N/A 0.357±0.00 N/A 0.235±0.00 N/A 0.204±0.00 0.200±0.00 0.075±0.00 N/A 0.280±0.00 N/A 0.407±0.23 0.257±0.01 0.122±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000009681 ENSMUST00000164107 6.227±1.11 3.428±2.18 9.428±0.28 21.947±2.37 4.440±2.13 4.375±2.09 1.384±0.34 6.563±1.54 2.869±1.06 12.074±1.70 0.858±0.24 7.812±3.41 8.910±3.13 3.040±0.29
ENSMUSG00000020175 ENSMUST00000020391 1.406±0.73 4.467±1.66 N/A 3.300±1.59 0.604±0.28 0.667±0.00 0.378±0.10 0.905±0.20 0.561±0.00 1.006±0.05 0.075±0.01 2.833±0.79 0.199±0.02 3.238±1.38
ENSMUST00000122815 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136944 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.132±0.00 N/A N/A N/A
ENSMUST00000139384 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.258±0.00 N/A N/A N/A
ENSMUST00000142507 0.951±0.55 2.968±0.75 0.756±0.15 1.627±0.28 0.460±0.06 0.383±0.14 0.137±0.03 0.560±0.03 0.378±0.11 1.124±0.00 0.045±0.02 2.808±0.91 0.119±0.01 1.775±0.37
ENSMUST00000146440 0.894±0.43 3.384±0.35 0.896±0.01 2.287±0.27 0.573±0.02 0.486±0.02 0.232±0.00 0.788±0.12 0.496±0.23 1.699±0.36 0.098±0.05 3.418±0.88 0.280±0.12 2.006±0.29
ENSMUST00000147802 0.134±0.00 3.236±0.92 0.751±0.01 2.258±0.94 0.481±0.11 0.405±0.10 N/A 1.277±0.62 0.623±0.33 1.263±0.27 0.079±0.02 2.459±0.39 0.192±0.06 2.431±0.49
ENSMUST00000151432 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.080±0.00 N/A N/A N/A

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