C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: active BCR-related
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000536794 ABR-026 ENSG00000159842 9606 - 17:1006080-1079146 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderENST00000536794
Transcript ID Bladder
ENST00000536794 0.961±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001Q9 CIL_0001Q9_0001 CGP 17:799313-1003671
CIL_00012J CIL_00012J_0001 CGP 17:997117-1229021
CIL_0001Q6 CIL_0001Q6_0001 CGP 17:1003518-1271460

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005096 IEA GTPase activator activity
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0007165 IEA signal transduction
GO:0032321 IEA positive regulation of Rho GTPase activity
GO:0035023 IEA regulation of Rho protein signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000065028 Abr-006 protein_coding Mus_musculus 0 2713
ENSMUST00000108407 Abr-201 protein_coding Mus_musculus 0 2571
ENSMUST00000108408 Abr-003 protein_coding Mus_musculus 0 2571
ENSMUST00000072740 Abr-001 protein_coding Mus_musculus 0 2571
ENSMUST00000094012 Abr-002 protein_coding Mus_musculus 0 2571
ENSMUST00000164107 Bcr-201 protein_coding Mus_musculus 0 701
ENSMUST00000141442 Abr-010 retained_intron Mus_musculus 0 634
ENSMUST00000130364 Abr-007 nonsense_mediated_decay Mus_musculus 0 632
ENSMUST00000131059 Abr-009 processed_transcript Mus_musculus 0 568
ENSDART00000082965 protein_coding Danio_rerio 0 483
ENSDART00000062073 BCR (1 of 2)-201 protein_coding Danio_rerio 0 228
ENSDART00000137009 BCR (1 of 2)-001 protein_coding Danio_rerio 0 228

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