C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000164181 Myl6-201 ENSMUSG00000090841 10090 - 10:128490860-128493875 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000164181
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000164181 536.424±30.79 116.542±71.60 3241.400±486.93 341.430±105.28 227.554±35.82 707.239±68.33 117.917±30.76 538.967±129.10 388.102±172.73 381.790±56.97 45.553±5.60 445.778±277.40 666.260±291.07 94.158±31.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00039G CIL_00039G_0002 CGP 10:128459236-128493875

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003774 TAS motor activity
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0006200 ISS ATP catabolic process
GO:0006936 TAS muscle contraction
GO:0007519 TAS skeletal muscle tissue development
GO:0008152 TAS metabolic process
GO:0008307 ISS structural constituent of muscle
GO:0016020 IEA membrane
GO:0016459 TAS myosin complex
GO:0016461 IDA unconventional myosin complex
GO:0030049 TAS muscle filament sliding
GO:0030898 ISS actin-dependent ATPase activity
GO:0031982 IEA vesicle
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000293422 MYL6-023 protein_coding Homo_sapiens 0 787
ENST00000348108 MYL6-024 protein_coding Homo_sapiens 0 728
ENST00000354968 MYL4-201 protein_coding Homo_sapiens 0 252
ENST00000393450 MYL4-001 protein_coding Homo_sapiens 0 252
ENST00000405661 MYL6B-002 retained_intron Homo_sapiens 0 302
ENST00000412707 LOC124685-001 processed_pseudogene Homo_sapiens 0 508
ENST00000436904 MYL6P3-001 processed_pseudogene Homo_sapiens 0 451
ENST00000449877 MYL6P1-001 processed_pseudogene Homo_sapiens 0 470
ENST00000450079 MYL6P2-001 processed_pseudogene Homo_sapiens 0 379
ENST00000536128 MYL6-005 protein_coding Homo_sapiens 0 680
ENST00000536623 MYL4-004 protein_coding Homo_sapiens 0 252
ENST00000545441 AC006448.1-201 protein_coding Homo_sapiens 0 512
ENST00000546630 MYL6-021 retained_intron Homo_sapiens 0 292
ENST00000546845 MYL6-009 nonsense_mediated_decay Homo_sapiens 0 287
ENST00000547408 MYL6-007 protein_coding Homo_sapiens 0 719
ENST00000547649 MYL6-002 protein_coding Homo_sapiens 0 791
ENST00000547703 MYL6-012 retained_intron Homo_sapiens 0 350
ENST00000548293 MYL6-010 protein_coding Homo_sapiens 0 693
ENST00000548400 MYL6-018 protein_coding Homo_sapiens 0 392
ENST00000548571 MYL6B-013 processed_transcript Homo_sapiens 4e-35 150
ENST00000548580 MYL6-014 protein_coding Homo_sapiens 0 451
ENST00000548725 MYL6-015 retained_intron Homo_sapiens 0 606
ENST00000549017 MYL6-025 protein_coding Homo_sapiens 0 368
ENST00000549178 MYL6B-006 retained_intron Homo_sapiens 0 344
ENST00000549392 MYL6-022 protein_coding Homo_sapiens 0 582
ENST00000549566 MYL6-013 protein_coding Homo_sapiens 0 449
ENST00000550152 MYL6B-005 processed_transcript Homo_sapiens 0 302
ENST00000550184 MYL6-004 retained_intron Homo_sapiens 0 640
ENST00000550443 MYL6B-001 protein_coding Homo_sapiens 0 346
ENST00000550639 MYL6-017 processed_transcript Homo_sapiens 0 512
ENST00000550697 MYL6-003 protein_coding Homo_sapiens 0 752
ENST00000551589 MYL6-001 protein_coding Homo_sapiens 0 719
ENST00000552297 MYL6-016 processed_transcript Homo_sapiens 0 390
ENST00000552568 MYL6B-011 protein_coding Homo_sapiens 0 265
ENST00000553066 MYL6B-003 protein_coding Homo_sapiens 0 346
ENST00000570772 MYL4-008 nonsense_mediated_decay Homo_sapiens 0 198
ENST00000571981 MYL4-007 nonsense_mediated_decay Homo_sapiens 0 252
ENST00000572303 MYL4-005 protein_coding Homo_sapiens 2e-37 159
ENST00000572316 MYL4-002 protein_coding Homo_sapiens 0 252
ENST00000573747 MYL4-009 nonsense_mediated_decay Homo_sapiens 0.000000000000001 88
ENST00000576874 MYL4-003 protein_coding Homo_sapiens 0 228

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