C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin, light chain 6B, alkali, smooth muscle and non-muscle
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000550443 MYL6B-001 ENSG00000196465 9606 + 12:56152439-56157976 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainMuscleENST00000550443
Transcript ID Brain Muscle
ENST00000550443 115.642±0.00 78.060±17.48

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003774 TAS motor activity
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005829 TAS cytosol
GO:0005859 TAS muscle myosin complex
GO:0006936 TAS muscle contraction
GO:0007519 TAS skeletal muscle tissue development
GO:0008152 TAS metabolic process
GO:0008307 TAS structural constituent of muscle
GO:0016459 TAS myosin complex
GO:0016461 TAS unconventional myosin complex
GO:0030049 TAS muscle filament sliding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026428 Myl6b-201 protein_coding Mus_musculus 0 880
ENSMUST00000116136 Gm5915-001 processed_pseudogene Mus_musculus 0 351
ENSMUST00000164181 Myl6-201 protein_coding Mus_musculus 0 346
ENSMUST00000074642 Gm8894-201 processed_pseudogene Mus_musculus 0 340
ENSMUST00000075585 Gm10080-201 pseudogene Mus_musculus 0 339
ENSMUST00000121022 Gm11836-001 processed_pseudogene Mus_musculus 0 331
ENSMUST00000153604 Gm5526-001 processed_pseudogene Mus_musculus 0 324
ENSMUST00000123074 Myl4-006 retained_intron Mus_musculus 4.99997e-41 172
ENSMUST00000106956 Myl4-004 protein_coding Mus_musculus 4.99997e-41 172
ENSMUST00000106957 Myl4-003 protein_coding Mus_musculus 4.99997e-41 172
ENSMUST00000153761 Myl4-007 protein_coding Mus_musculus 4.99997e-41 172
ENSMUST00000018800 Myl4-001 protein_coding Mus_musculus 4.99997e-41 172
ENSMUST00000130588 Myl4-005 nonsense_mediated_decay Mus_musculus 8e-39 165
ENSMUST00000155271 Myl4-002 retained_intron Mus_musculus 0.000000000000002 88

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