C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin, light chain 4, alkali; atrial, embryonic
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000573747 MYL4-009 ENSG00000198336 9606 + 17:47209342-47223057 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartLungMusclePlacentaENST00000573747
Transcript ID Brain Breast Colon Heart Lung Muscle Placenta
ENST00000573747 0.121±0.00 0.754±0.00 0.266±0.00 75.366±0.00 5.302±0.00 0.322±0.00 0.582±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HD CIL_0008HD_0001 VISTA 17:46991162-47592148
CIL_0002QR CIL_0002QR_0001 CGP 17:47117703-47223679
CIL_0004WN CIL_0004WN_0001 CGP 17:47200446-47311816

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000155271 Myl4-002 retained_intron Mus_musculus 0 326
ENSMUST00000123074 Myl4-006 retained_intron Mus_musculus 0 326
ENSMUST00000106956 Myl4-004 protein_coding Mus_musculus 0 326
ENSMUST00000106957 Myl4-003 protein_coding Mus_musculus 0 326
ENSMUST00000018800 Myl4-001 protein_coding Mus_musculus 0 326
ENSMUST00000153761 Myl4-007 protein_coding Mus_musculus 0 316
ENSMUST00000130588 Myl4-005 nonsense_mediated_decay Mus_musculus 0 276
ENSMUST00000136244 Myl4-008 protein_coding Mus_musculus 3e-26 122
ENSMUST00000116136 Gm5915-001 processed_pseudogene Mus_musculus 7e-18 95
ENSMUST00000153604 Gm5526-001 processed_pseudogene Mus_musculus 3e-16 90
ENSMUST00000121022 Gm11836-001 processed_pseudogene Mus_musculus 3e-16 90
ENSMUST00000164181 Myl6-201 protein_coding Mus_musculus 0.000000000000001 88
ENSMUST00000075585 Gm10080-201 pseudogene Mus_musculus 0.000000000000004 86

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