C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RB-associated KRAB zinc finger
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000396912 RBAK-201 ENSG00000146587 9606 + 7:5045922-5069488 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000396912
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000396912 1.496±0.00 0.398±0.00 0.633±0.33 0.925±0.30 0.778±0.00 0.948±0.00 2.158±0.00 1.093±0.00 0.831±0.16 2.074±0.70 0.890±0.34 1.948±0.67

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005622 IEA intracellular
GO:0005634 TAS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 TAS:IEA regulation of transcription, DNA-templated
GO:0008270 NAS zinc ion binding
GO:0045892 TAS negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000049861 Rbak-201 protein_coding Mus_musculus 0 1480
ENSMUST00000166382 Rbak-003 protein_coding Mus_musculus 0 1480
ENSMUST00000165318 Rbak-001 protein_coding Mus_musculus 0 1480
ENSMUST00000164068 Rbak-002 protein_coding Mus_musculus 0 1415
ENSMUST00000032591 Zfp12-001 protein_coding Mus_musculus 9e-36 158
ENSMUST00000075916 Zfp12-003 nonsense_mediated_decay Mus_musculus 7e-27 128
ENSMUST00000162861 Zfp12-005 protein_coding Mus_musculus 2e-26 126
ENSMUST00000077485 Zfp12-002 protein_coding Mus_musculus 2e-26 126
ENSMUST00000110216 Zfp930-201 protein_coding Mus_musculus 4e-24 119
ENSMUST00000172448 Zfp27-201 protein_coding Mus_musculus 0.00003 57
ENSMUST00000159920 Zfp27-002 protein_coding Mus_musculus 0.00003 57
ENSMUST00000053521 Zfp27-003 protein_coding Mus_musculus 0.00003 57
ENSMUST00000161904 Zfp27-004 protein_coding Mus_musculus 0.00003 57
ENSMUST00000162592 Zfp27-001 protein_coding Mus_musculus 0.00003 57

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