C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SKI family transcriptional corepressor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000166956 Skor2-201 ENSMUSG00000091519 10090 + 18:76856405-76900342 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverTestisENSMUST00000166956
Transcript ID Brain Liver Testis
ENSMUST00000166956 0.590±0.50 0.003±0.00 0.022±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008IS CIL_0008IS_0002 VISTA 18:76256127-76856905
CIL_0008OV CIL_0008OV_0002 VISTA 18:76273836-76874483
CIL_0007MD CIL_0007MD_0002 UCNEbase 18:76423583-76863422
CIL_0008DZ CIL_0008DZ_0002 VISTA 18:76562703-77163723

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003714 IDA transcription corepressor activity
GO:0005634 IDA nucleus
GO:0005737 IBA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0021587 IMP cerebellum morphogenesis
GO:0021702 IMP cerebellar Purkinje cell differentiation
GO:0021936 IMP regulation of cerebellar granule cell precursor proliferation
GO:0030514 IGI negative regulation of BMP signaling pathway
GO:0042826 IPI histone deacetylase binding
GO:0045880 IMP positive regulation of smoothened signaling pathway
GO:0046332 IPI SMAD binding
GO:0048814 IMP regulation of dendrite morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000400404 SKOR2-001 protein_coding Homo_sapiens 0 1018
ENST00000425639 SKOR2-002 protein_coding Homo_sapiens 0 3197
ENST00000620245 SKOR2-201 protein_coding Homo_sapiens 0 3299

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