C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000167688 Cdh1-201 ENSMUSG00000000303 10090 + 8:106603379-106669362 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000167688
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000167688 6.718±4.73 0.048±0.03 0.080±0.00 9.310±1.32 135.115±16.09 0.368±0.26 12.790±2.16 1.504±0.00 26.017±12.17 0.037±0.00 9.305±1.97 19.057±2.56 0.315±0.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004RG CIL_0004RG_0002 CGP 8:106603351-106851439

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IMP in utero embryonic development
GO:0001829 IMP trophectodermal cell differentiation
GO:0003382 IMP epithelial cell morphogenesis
GO:0005509 IDA calcium ion binding
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005768 IEA endosome
GO:0005886 IDA plasma membrane
GO:0005911 IDA cell-cell junction
GO:0005912 IDA adherens junction
GO:0005913 IDA cell-cell adherens junction
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007605 IMP sensory perception of sound
GO:0008013 IPI beta-catenin binding
GO:0009986 IDA cell surface
GO:0016323 IDA basolateral plasma membrane
GO:0016337 IMP single organismal cell-cell adhesion
GO:0016339 IDA calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0016342 IDA catenin complex
GO:0019538 IDA protein metabolic process
GO:0019903 IPI protein phosphatase binding
GO:0019904 IPI protein domain specific binding
GO:0030424 IDA axon
GO:0032880 IMP regulation of protein localization
GO:0033268 IDA node of Ranvier
GO:0033561 IMP regulation of water loss via skin
GO:0043219 IDA lateral loop
GO:0043220 IDA Schmidt-Lanterman incisure
GO:0043281 IDA regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0043296 IDA apical junction complex
GO:0043679 IDA axon terminus
GO:0045177 IDA apical part of cell
GO:0050680 IMP negative regulation of epithelial cell proliferation
GO:0051260 IDA protein homooligomerization
GO:0060576 IMP intestinal epithelial cell development
GO:0060662 IMP salivary gland cavitation
GO:0060693 IMP regulation of branching involved in salivary gland morphogenesis
GO:0070830 IMP tight junction assembly
GO:0071230 IDA cellular response to amino acid stimulus
GO:0071944 IDA cell periphery
GO:0090002 IDA establishment of protein localization to plasma membrane
GO:0090090 IMP negative regulation of canonical Wnt signaling pathway
GO:0090102 IMP cochlea development
GO:2000008 IMP regulation of protein localization to cell surface
GO:2001222 IDA regulation of neuron migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261769 CDH1-001 protein_coding Homo_sapiens 0 1965
ENST00000562836 CDH1-002 processed_transcript Homo_sapiens 0 1847
ENST00000566612 CDH1-005 nonsense_mediated_decay Homo_sapiens 0 1075
ENST00000612417 CDH1-202 protein_coding Homo_sapiens 0 1277
ENST00000621016 CDH1-203 protein_coding Homo_sapiens 0 1301

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