C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004RG_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000039068-ENSG00000103047 CGP 9606 16:68737225-69085180
GeneTranscriptPositionBiotype
ENSG00000039068 (CDH1)
cadherin 1, type 1, E-cadherin (epithelial) 		ENST00000261769 (CDH1-001) 68737225-68835548 protein_coding
ENST00000422392 (CDH1-004) 68737352-68833536 protein_coding
ENST00000561751 (CDH1-010) 68801740-68812240 nonsense_mediated_decay
ENST00000562118 (CDH1-013) 68823245-68833584 retained_intron
ENST00000562836 (CDH1-002) 68763294-68833538 processed_transcript
ENST00000564676 (CDH1-003) 68765120-68808848 processed_transcript
ENST00000564745 (CDH1-007) 68770948-68808747 processed_transcript
ENST00000565810 (CDH1-011) 68812083-68813413 retained_intron
ENST00000566510 (CDH1-006) 68737352-68833536 nonsense_mediated_decay
ENST00000566612 (CDH1-005) 68737312-68835030 nonsense_mediated_decay
ENST00000567320 (CDH1-012) 68808527-68809003 retained_intron
ENST00000611625 (CDH1-201) 68737292-68835541 protein_coding
ENST00000612417 (CDH1-202) 68737292-68834281 protein_coding
ENST00000621016 (CDH1-203) 68737309-68835534 protein_coding
ENSG00000103047 (TANGO6)
transport and golgi organization 6 homolog (Drosophila) 		ENST00000261778 (TANGO6-001) 68843606-69085180 protein_coding
ENST00000561566 (TANGO6-004) 68860165-68863160 retained_intron
ENST00000561856 (TANGO6-007) 68909380-68927769 nonsense_mediated_decay
ENST00000561931 (TANGO6-011) 69026575-69083846 processed_transcript
ENST00000562000 (TANGO6-008) 68973040-69083515 processed_transcript
ENST00000562491 (TANGO6-006) 68900238-68907533 retained_intron
ENST00000564180 (TANGO6-002) 68843604-68867976 retained_intron
ENST00000565037 (TANGO6-003) 68843614-68846893 processed_transcript
ENST00000565852 (TANGO6-005) 68875224-68902442 nonsense_mediated_decay
ENST00000568361 (TANGO6-010) 68973872-69083543 retained_intron
ENSG00000199979 (Y_RNA)
Y RNA 		ENST00000363109 (Y_RNA.1-298) 68885576-68885677 misc_RNA
ENSG00000200558 (RNA5SP429)
RNA, 5S ribosomal pseudogene 429 		ENST00000363688 (RNA5SP429-201) 68742480-68742588 rRNA
ENSG00000244378 (RPS2P45)
ribosomal protein S2 pseudogene 45 		ENST00000469997 (RPS2P45-002) 69033986-69036042 processed_transcript
ENST00000490535 (RPS2P45-001) 69033675-69034521 transcribed_processed_pseudogene
ENSG00000260459 (FTLP14)
ferritin, light polypeptide pseudogene 14 		ENST00000562087 (FTLP14-001) 68822587-68823070 processed_pseudogene
ENSG00000266801 (RP11-521L9.2)
 ENST00000568179 (RP11-521L9.2-001) 68933820-68937725 sense_intronic
ENSG00000275504 (U7)
U7 small nuclear RNA 		ENST00000610841 (U7.1-206) 68926894-68926957 snRNA
CIL_0004RG_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000000303-ENSMUSG00000041949 CGP 10090 8:106603351-106851439
GeneTranscriptPositionBiotype
ENSMUSG00000000303 (Cdh1)
cadherin 1 		ENSMUST00000000312 (Cdh1-001) 106603351-106670246 protein_coding
ENSMUST00000136580 (Cdh1-003) 106604143-106653919 processed_transcript
ENSMUST00000167688 (Cdh1-201) 106603379-106669362 protein_coding
ENSMUSG00000041949 (Tango6)
transport and golgi organization 6 		ENSMUST00000048359 (Tango6-201) 106683068-106851439 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004RG_0001ENSG00000039068ENST00000261769ENST00000422392ENST00000561751ENST00000562118ENST00000562836ENST00000564676ENST00000564745ENST00000565810ENST00000566510ENST00000566612ENST00000567320ENST00000611625ENST00000612417ENST00000621016ENSG00000103047ENST00000261778ENST00000561566ENST00000561856ENST00000561931ENST00000562000ENST00000562491ENST00000564180ENST00000565037ENST00000565852ENST00000568361ENSG00000199979ENST00000363109ENSG00000200558ENST00000363688ENSG00000244378ENST00000469997ENST00000490535ENSG00000260459ENST00000562087ENSG00000266801ENST00000568179ENSG00000275504ENST00000610841CIL_0004RG_0002ENSMUSG00000000303ENSMUST00000000312ENSMUST00000136580ENSMUST00000167688ENSMUSG00000041949ENSMUST00000048359
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004RG_0001ENSG00000039068ENST00000261769ENST00000422392ENST00000562118ENST00000562836ENST00000564676ENST00000566510ENST00000566612ENST00000612417ENST00000621016ENSG00000103047ENST00000261778ENST00000561566ENST00000565852ENST00000568361ENSG00000199979ENST00000363109ENSG00000200558ENST00000363688ENSG00000244378ENST00000469997ENST00000490535ENSG00000260459ENST00000562087ENSG00000266801ENST00000568179ENSG00000275504ENST00000610841CIL_0004RG_0002ENSMUSG00000000303ENSMUST00000000312ENSMUST00000136580ENSMUST00000167688ENSMUSG00000041949ENSMUST00000048359
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000039068 ENST00000261769 N/A N/A 3.124±0.00 0.679±0.00 6.346±1.29 22.879±0.00 N/A 12.166±1.55 4.628±0.05 6.176±2.22 N/A 7.563±3.67 33.338±1.46 0.843±0.00
ENST00000422392 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.285±0.00 N/A 0.070±0.00
ENST00000561751 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562118 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 66.384±0.00 0.119±0.00
ENST00000562836 N/A N/A 2.951±0.00 N/A N/A N/A N/A N/A N/A 2.313±0.00 N/A 3.902±0.00 N/A N/A
ENST00000564676 N/A N/A N/A N/A N/A N/A 0.093±0.00 N/A N/A N/A 0.014±0.00 N/A N/A N/A
ENST00000564745 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565810 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566510 N/A N/A N/A 0.225±0.00 N/A N/A N/A N/A N/A 3.016±0.00 N/A N/A N/A N/A
ENST00000566612 N/A N/A N/A N/A N/A N/A 0.010±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000567320 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611625 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000612417 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.202±0.00 N/A N/A N/A
ENST00000621016 N/A N/A N/A 0.118±0.00 5.934±0.00 4.935±0.00 N/A 11.905±0.00 5.826±0.00 2.642±0.42 N/A 7.235±6.84 22.321±13.32 1.144±0.00
ENSG00000103047 ENST00000261778 2.465±0.00 2.138±0.00 1.395±0.00 1.595±0.65 N/A 1.188±0.75 1.053±0.35 1.836±1.08 3.617±0.00 2.062±0.23 4.281±0.00 1.703±1.29 1.857±0.30 2.293±0.02
ENST00000561566 N/A N/A N/A 3.294±0.00 N/A 2.526±0.00 N/A N/A 7.118±0.00 7.132±0.00 N/A N/A N/A N/A
ENST00000561856 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561931 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562000 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562491 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564180 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565037 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565852 N/A N/A N/A N/A N/A 2.983±0.00 N/A N/A N/A N/A N/A 2.937±0.00 N/A N/A
ENST00000568361 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.771±0.00 4.177±0.00 N/A
ENSG00000199979 ENST00000363109 N/A 1.310±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000200558 ENST00000363688 N/A N/A N/A N/A N/A N/A N/A 1.108±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000244378 ENST00000469997 0.073±0.00 0.231±0.00 N/A 0.198±0.00 0.094±0.04 0.042±0.02 0.022±0.00 0.018±0.00 0.183±0.17 0.144±0.11 N/A 0.046±0.01 0.055±0.00 0.244±0.13
ENST00000490535 N/A N/A N/A N/A 0.273±0.00 0.397±0.00 0.088±0.00 0.241±0.00 N/A N/A N/A 0.153±0.00 0.104±0.00 0.628±0.28
ENSG00000260459 ENST00000562087 N/A 0.181±0.00 N/A N/A 0.340±0.00 0.301±0.13 N/A 0.475±0.00 N/A 0.836±0.00 N/A 0.375±0.26 1.216±0.64 0.091±0.00
ENSG00000266801 ENST00000568179 N/A 0.331±0.00 N/A N/A 0.088±0.00 0.084±0.00 0.058±0.00 0.090±0.00 0.471±0.12 0.036±0.00 N/A 0.082±0.03 N/A 0.142±0.06
ENSG00000275504 ENST00000610841 N/A 1.097±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000000303 ENSMUST00000000312 11.171±11.13 0.038±0.02 31.639±6.46 0.924±0.53 10.562±0.86 107.316±14.80 0.501±0.34 31.643±1.38 10.583±4.18 55.492±8.91 0.076±0.04 12.024±3.69 48.046±11.40 0.343±0.20
ENSMUST00000136580 0.042±0.00 0.066±0.03 N/A N/A N/A N/A 0.052±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000167688 6.718±4.73 0.048±0.03 N/A 0.080±0.00 9.310±1.32 135.115±16.09 0.368±0.26 12.790±2.16 1.504±0.00 26.017±12.17 0.037±0.00 9.305±1.97 19.057±2.56 0.315±0.27
ENSMUSG00000041949 ENSMUST00000048359 2.820±0.45 3.060±0.44 1.487±0.15 1.296±0.51 2.025±0.83 1.792±0.28 1.314±0.40 2.057±0.62 1.476±0.59 1.949±0.42 0.877±0.34 4.047±1.54 0.907±0.60 0.996±0.22

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